YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573631
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHINRSTET MSDKRDLPTK YGYDNSSKHT PDSETDDHNK TNQSQQVIDE KNSKENIEIQ  60
   61 VSSDNELSSL ESDQLAKNPF LDPKVAEYYD TMYRTSNYES YSAFDPFFEW DEKEEKKLIG 120
  121 KLNYRVALTA CFMFIALQVD RGNLSNATSD NFLDDLGLTT NDYNAGNTIF RVAFLLAEIP 180
  181 SQLISKALGP DIFIPIQICA WSIVAMCQAA LSGKASFFVT RLLIGAIEGG FIADLVLWLS 240
  241 YFFTGKELPV RLSWFWTTLS LVDIFNSLAA FGILRMRGLA GMAGWRWLFL LEGAFTLLIG 300
  301 IFSFYLMVPS AVQTKNWMHP KGWFTDREVK IVVNRILRDD PTKGSMHNRQ GLTIKQIIKS 360
  361 FRDVDIFPLM AIGLINFIGS STFGSYFALL NRQMGFSTFD TNLLMIPPKV LHIGFLLLIT 420
  421 WLSEFINERS GVCLIAPIYS ATIMAVIRWW PGSGKQVWPT YVLNTLYSGQ PYIHAILVAW 480
  481 VSRNSNGVRT RSISSALYNM SVQLSSIIGQ NVYRKDDLPL YKRGNMQLFF VEMATIPIIM 540
  541 LTKAYYVFKN KRRDKIWNAM SEEEKDDYRK NSKVEGARRL DFRFAH

Type	Start	End	Confidence
Cytoplasmic	1	191	0.75
Transmembrane Helix	192	212	0.83
Non-Cytoplasmic	213	221	0.48
Transmembrane Helix	222	243	0.90
Cytoplasmic	244	251	0.61
Transmembrane Helix	252	274	0.90
Non-Cytoplasmic	275	286	0.57
Transmembrane Helix	287	308	0.91
Cytoplasmic	309	365	0.64
Transmembrane Helix	366	390	0.87
Non-Cytoplasmic	391	402	0.63
Transmembrane Helix	403	423	0.84
Cytoplasmic	424	430	0.60
Transmembrane Helix	431	451	0.91
Non-Cytoplasmic	452	527	0.57
Transmembrane Helix	528	547	0.80
Cytoplasmic	548	586	0.90