YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573633
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	93	0.74
Transmembrane Helix	94	111	0.35
Non-Cytoplasmic	112	163	0.58
Transmembrane Helix	164	183	0.74
Cytoplasmic	184	189	0.79
Transmembrane Helix	190	214	0.84
Non-Cytoplasmic	215	225	0.77
Transmembrane Helix	226	246	0.94
Cytoplasmic	247	258	0.74
Transmembrane Helix	259	280	0.94
Non-Cytoplasmic	281	338	0.87
Transmembrane Helix	339	361	0.93
Cytoplasmic	362	372	0.74
Transmembrane Helix	373	394	0.90
Non-Cytoplasmic	395	401	0.79
Transmembrane Helix	402	422	0.94
Cytoplasmic	423	464	0.57
Transmembrane Helix	465	485	0.59
Non-Cytoplasmic	486	499	0.78
Transmembrane Helix	500	519	0.95
Cytoplasmic	520	558	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVTEKDIAN SGANSIASNN TSSSLKKQDN KVITYTESNS SLESDEISKN PFLDPKVEEY  60
   61 YRDLYEDSNY ESYRAFDPQF TWSKEEENKV IKKINLRVAL TACILFVGLQ VDRGNLQQAV 120
  121 SDNLLKDLGM TTNDYNTGNT IFYVCFLVAE LPSQLISKAL GPDIFIPIQM CAWSIVAMCQ 180
  181 AALKGKTSFF VTRALIGILE GGFIADLVLW LSYFFTSKEL PVRLSWFWTT LSLVQIGTSL 240
  241 LAFGILRMRG VAGLEGWRWL FLLEGIITLI IGIAAFYLMV PSAVQTKNWM HPKGWFTDRE 300
  301 EKIVVNRILR DDPTKGSMHN RQGITPKALW NSLTDYNLWP IYAIGVVAYI GTSTFGAYFT 360
  361 LMNKQLGFST FNTNLLTIPQ AVLHIILLLA ITWFSEKVND RAFVALIAPF YALPLIAIIR 420
  421 WWPCAGKNIW ATYVLNTLYV GQPYIHAICV SWVSRNSNHV RTRSISSAVY NMFVQLGSII 480
  481 ASNIYRKDDL PLYKRGNMQL FFITLTLIPV LLLAKGYYVW QNKRRNKVWK AMTEEEKDAY 540
  541 RKTTKDEGAK RLDFRFSH