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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.10565, orf...
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSTSSVESG PDPNILSSMV KSPKSDKSKP LPSQPHQETL LHHFKLISVN FKEAALDSPS  60
   61 FRASMNHLDL QINTIEQWLT ALASSFKKIP KYLKEVQSYS NSFLEHLVPT FIQDGIIDQE 120
  121 YTVTGLNTTL DGLKTVWGLS IQALSVDAKN LKSIELFKRH HVIKYKETRK RYEDYQAKYD 180
  181 KYLSIYLSSS KSKDPLMVIE DAKQLYQVRK EYIHASLDLV IEIQNLSKNL NKLLVGVNTD 240
  241 LWRNKWNIFG SRGVGDAIKE EWDKIQRIQS WNDSYTLAIE KLNSDMLAAR NQVEEGCHIQ 300
  301 FQPSTNVNDY KSTIINNRTL RDIDEPGVEK HGYLFMKTWT EKSSKPIWVH RWAFIKNGVF 360
  361 GLLVVSPSQT FVQETDKIGI LLCNVRYAPN EDRRFCFEIR TNDFTAVFQA ESLVELKSWL 420
  421 KVFENEKFRI SGPEAISNGL FNIASGRFPP IISEFSSTVD TVIDQQLTNA KVTLAGGQIV 480
  481 AASSLSNHLE RFEDFFKKYM YFEIPKICPP FMTDTTKSSI MAYCLTSPTQ IPNALTANIW 540
  541 GSVNWGLYYL HDTARDSSTY LTGKDAEMIK FQEEHFENDK FYPDFYPKEY VNLDIQMRAL 600
  601 FETAVEPGEY CVLSYSCIWS PNSKQELSGR CFVTNYHMYF YMQALGFVAL FKGFLGHLVS 660
  661 VEFVSQKNYD LMKVYNIDGV IKMKVFLDDA ICIKKKLVYL INNIVSDKPK SLEGVLADFS 720
  721 DIEKEIAVEK SDQKNLREIS QLSKGLSSKS LASEKLLLSG ETSSILPGKS GRMIKHRVNF 780
  781 TPDYNLISDR TYPAPPKAIF HALLGDNSVV FRSQLSFAST KYFLQKPWAT SSKGTLYRDF 840
  841 NVPAMYDGKD CFVQVRQEID NMEDNTYYTF THEMSKFELL LGSPYKTVFK IVIVEHISKR 900
  901 SKVFVYSKTY FDRLSVWNPL VIRLNNQVDV NKVRKLEKSI SEAVKEIGTH GMIVRAIYLY 960
  961 GKLSHTSKPE AVTSTSVIKF GIVSLFKLGL GKAFSKAYSF AVKSFIKPFQ LVVLLLKSLR1020
 1021 MNVFLVFIIV LLSFLNLFLA GKTATSYWNT RSASKLAQEY VTKEPRMLQR SVYLKDLESI1080
 1081 LNENISIAES RPFSLFKQNS FIFNLDADSD WSNYFGSNAR DVARSLKSSF QDIGIKRHEL1140
 1141 LVKLKILKSM EEEIIQAEWQ NWLMSEAQKC DYVMDNVVGQ IDEVDNYQEG VDNIIEYCHE1200
 1201 CKKILANLV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle