YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68465404, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	104	0.99
Transmembrane Helix	105	127	0.92
Cytoplasmic	128	138	0.78
Transmembrane Helix	139	158	0.95
Non-Cytoplasmic	159	168	0.84
Transmembrane Helix	169	190	0.89
Cytoplasmic	191	273	0.98
Transmembrane Helix	274	296	0.87
Non-Cytoplasmic	297	306	0.80
Transmembrane Helix	307	329	0.80
Cytoplasmic	330	357	0.86
Transmembrane Helix	358	380	0.72
Non-Cytoplasmic	381	396	0.74
Transmembrane Helix	397	416	0.90
Cytoplasmic	417	461	0.86
Transmembrane Helix	462	479	0.75
Non-Cytoplasmic	480	494	0.75
Transmembrane Helix	495	516	0.83
Cytoplasmic	517	531	0.85
Transmembrane Helix	532	551	0.89
Non-Cytoplasmic	552	566	0.79
Transmembrane Helix	567	588	0.90
Cytoplasmic	589	605	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPIALLLVL FTSLSLADMN MDSHSDMMSG SHHNEDVDSL ESMPTSTENT DNINSTESLV  60
   61 PIPHVMKHMH GVPILQTKLL PQERLFWENY NTTTYFTVES AHRPALYLHI AVGLFSVFVF 120
  121 YPISLIFNNL NMGKSYMTML LIHSSCIVFS LLNYSIFINS IPDLYPGNAY NSMVIILFVT 180
  181 TILQLIFAFI KNIEPGESDG NKYFQLNNQH MRANSSDEES LQSMISPPST DDVIPSEKPS 240
  241 SFKMSNFYDK VMKFRTWVAQ TKFHKISKIG FNLLNWGHFF YFLILIPTGV ATFCCYGKGN 300
  301 TVFNLLAHFI KGGVFFAYGL LSLSRYCGGF TNKGWAWNHK FIDRTKKQSF WFSLQNKGLW 360
  361 TMEMIESSLI LFYGSTNIFL EHLANAGGEW SPKDLQHASI AFIFIGCGLC GVITEIKLQD 420
  421 WRYEQAMADM EKYQYQGEEQ NQQELQSNTN NNNNTIIKAS PGFSPNPFPI VTIYWTGILM 480
  481 SKHQQASSLS TEVHVQWGNM FVLGCAFRFI TYLMLMLNAK VPKDLSRPSR PFTELVVSFS 540
  541 LLCGGLIFME STDPVILSFE YYGLTSMFTL NISLGFTTLF MGWQMLLFAF KDWLKSKYNK 600
  601 QQDMV