YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4802
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGTSFEEYF SIQTFLIVFR ETLESAIIIS VLLSFVHQTF NGNTKKSNRD TRNQTYNSTE  60
   61 SSSSLIPTES DDLTFEKNDA KLCRYLQLQI WIGGLLGLLV CLIIGAIILG IFYIIGNDLW 120
  121 TVAEHYWEGT FSIIASIIIS VMGIKILRVN KMQEQWKLKL GKILQSSGYL NNSNNQQSFN 180
  181 KAGRTWATRI ELWSEKYNMF ILPFVTTLRE GLEAIAVIGG IGINENTSVM ALVNAAVLAI 240
  241 MSGILVGAIL YRYGNTLSLK MFLITSTCFL YLVAAGLFSK GVWNFELQRF IDKCGGLDVS 300
  301 ETGHGPGSYD IAISVWHVNC CNGEMQEDGV FWMVFTAILG WTNSATIGSV VSYNVYWIVI 360
  361 ILVFWSLIYE EKNGFLPLIP ISWQLKRIQK RKNLYQPLDA PEIGVHEEVR ESMDSLNSET 420
  421 PLQR

Type	Start	End	Confidence
Cytoplasmic	1	90	0.82
Transmembrane Helix	91	115	0.91
Non-Cytoplasmic	116	128	0.84
Transmembrane Helix	129	149	0.92
Cytoplasmic	150	198	0.98
Transmembrane Helix	199	223	0.78
Non-Cytoplasmic	224	229	0.77
Transmembrane Helix	230	251	0.93
Cytoplasmic	252	260	0.68
Transmembrane Helix	261	279	0.94
Non-Cytoplasmic	280	340	0.83
Transmembrane Helix	341	368	0.75
Cytoplasmic	369	424	0.88