YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4737
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.87
Transmembrane Helix	7	29	0.90
Non-Cytoplasmic	30	41	0.81
Transmembrane Helix	42	62	0.94
Cytoplasmic	63	72	0.82
Transmembrane Helix	73	91	0.93
Non-Cytoplasmic	92	97	0.69
Transmembrane Helix	98	120	0.90
Cytoplasmic	121	128	0.87
Transmembrane Helix	129	153	0.88
Non-Cytoplasmic	154	161	0.91
Transmembrane Helix	162	188	0.82
Cytoplasmic	189	235	0.97
Transmembrane Helix	236	256	0.92
Non-Cytoplasmic	257	272	0.87
Transmembrane Helix	273	294	0.93
Cytoplasmic	295	312	0.95
Transmembrane Helix	313	332	0.96
Non-Cytoplasmic	333	338	0.74
Transmembrane Helix	339	361	0.88
Cytoplasmic	362	380	0.77
Transmembrane Helix	381	399	0.87
Non-Cytoplasmic	400	405	0.83
Transmembrane Helix	406	426	0.94
Cytoplasmic	427	446	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLKWWYTFI ISMFVISAAY GSSCLSGGLS TVNNKYHVST EVSTLTVSLM VIGFCVGPLL  60
   61 WAPMSEEYGR RPTYFISFGL YVIFNIPCAL SPNIGGLLVC RFLCGVFASS ALSIAGASLV 120
  121 DMHNDTRGLA LSFFSFCPYS GPVISLIVNG FIATDTERMD LIIWVNMAFA GVMWIMVSLM 180
  181 PETYAPVILK RRAKKLRKET GNDKIMTEQE ATPLSFKEMV NECLIRPLKF VVTEPLLDLV 240
  241 CAFVALIYAY LYAFFFAYPY IFSTLYGFGD DKIGLMFIPI LIGAGFAVIT TYVLEVEYSK 300
  301 LVKRRKPEPE DRLWGAMVGA PFPCIALFIL GATSYKHIIW VGPASSGIAF GYGMVLIYYS 360
  361 LNNYIIDTYA KYAASALATK VFLRSAGGAA FPLFVTQMYE GLGLQWASWL LAFVALAMVL 420
  421 IPFTFYKWGK TVRSKLCKED YSAALI