YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.13383, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.99
Transmembrane Helix	34	52	0.93
Non-Cytoplasmic	53	82	0.88
Transmembrane Helix	83	103	0.93
Cytoplasmic	104	110	0.87
Transmembrane Helix	111	132	0.85
Non-Cytoplasmic	133	137	0.59
Transmembrane Helix	138	160	0.80
Cytoplasmic	161	170	0.77
Transmembrane Helix	171	192	0.84
Non-Cytoplasmic	193	203	0.70
Transmembrane Helix	204	223	0.88
Cytoplasmic	224	294	0.87
Transmembrane Helix	295	316	0.81
Non-Cytoplasmic	317	328	0.83
Transmembrane Helix	329	351	0.88
Cytoplasmic	352	358	0.85
Transmembrane Helix	359	380	0.94
Non-Cytoplasmic	381	388	0.81
Transmembrane Helix	389	414	0.86
Cytoplasmic	415	425	0.90
Transmembrane Helix	426	449	0.86
Non-Cytoplasmic	450	461	0.80
Transmembrane Helix	462	482	0.92
Cytoplasmic	483	748	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNLSVFPFL TRIMYDASLE DEYYRQMRQK SSSISAFKVG LVAAMGGFLY GYDTGLINDL  60
   61 LEMEYVYTHF PSNNKSFTSH ERSILVAILS LGTFIGALIA PLASDRYGRK FSIMMSSGLI 120
  121 FITGNILQIA SASIALMCVG RFVSGVSVGI LSAIVPLYQA EVSPKWSRGS VVFTYQWSIT 180
  181 AGLLVSSAVC QGTRKINNSE SYRIPIGLQF LWALILFFGM SFLPESPRYY VQQDNLQSAL 240
  241 DSLCKLRKLP PDDDDLIEEL VDIKANYDYE LSYGKTTVLD CFKSGGGRHK QGLRMLTGIG 300
  301 VQFFQQCSGI NFIFYYGVNF FSSTGINNYY IMSFITYLVN VIFTVPGIMM IDVVGRRPLL 360
  361 FWGGVGMAVC NFIIAIAGVS VKNDEVNGIL CVSFACVFIA FFASTWGGCT WALCSDIYGI 420
  421 SIRQKAVALT AATNWLVNFI FAFITPYLID TGQHTAAIGS KIFFIWGSFN ACGAIFVFFT 480
  481 VYETKGLKLE EVDYMYVHCD NARVSTKFIS TKIDFAHLDE NYNPIPMTQL PDSTSSNEMY 540
  541 HDKGSDENSS PQQLPHYHQQ QPLYNGEDQN NLTIIPYDNS STISSVNSIE ERRDSIPSTN 600
  601 GLSFTSSSQS HPQSNSYSHS NSHSATYRSK SHNSMISNDY QSYLESIQRE YSQHYQNSSA 660
  661 MIKQLSRNSR NNGSDQEERH EPIQKQEIID SPLNINSINH INNIPTTVIA TPFFAHPPSD 720
  721 SDSSDDEEEE EVVVEQEGVK INDVTTIK