YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5859, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	80	0.95
Transmembrane Helix	81	97	0.83
Non-Cytoplasmic	98	118	0.78
Transmembrane Helix	119	138	0.83
Cytoplasmic	139	146	0.72
Transmembrane Helix	147	168	0.88
Non-Cytoplasmic	169	173	0.80
Transmembrane Helix	174	195	0.88
Cytoplasmic	196	208	0.79
Transmembrane Helix	209	230	0.93
Non-Cytoplasmic	231	240	0.87
Transmembrane Helix	241	263	0.91
Cytoplasmic	264	312	0.94
Transmembrane Helix	313	334	0.60
Non-Cytoplasmic	335	348	0.61
Transmembrane Helix	349	368	0.70
Cytoplasmic	369	375	0.69
Transmembrane Helix	376	396	0.84
Non-Cytoplasmic	397	405	0.79
Transmembrane Helix	406	428	0.85
Cytoplasmic	429	436	0.78
Transmembrane Helix	437	456	0.88
Non-Cytoplasmic	457	467	0.76
Transmembrane Helix	468	489	0.94
Cytoplasmic	490	526	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSEKDSEIQ GINIEPIVSF TKEDLQLDKS HVLTTVISPS GKEVAITNDV DQVMQFVLDH  60
   61 QNTKVVLDEA TDKKLLRKID MYMLPVMCLL YCFQFMDKSS TSYASILGLR EDLNMVGDMY 120
  121 SWIATAFYLG YLAFEFPASM LLQRFPVAKT VSVFIIVWGI ILCLHSVPQY PGFIALRTIL 180
  181 GMLESSVTPA FTIITSQWYK KEEQFLRTSW WFAFNGIGTI LGSAIAYGLY QNDGNYSLPT 240
  241 WKLVFIVTGC LTIFLGFVVL IHIPDTPTQA WFLTDEEKLL VVERIRTNQQ GFGNTHFKKN 300
  301 QFIEALTDYR SWLLVIYALS SNIPNGGLTN FSGILLYEDF QYSEAKSLLM QMPQGAVEIV 360
  361 GCVLLAWCSQ FISSRLLMTV FTTSLTIMSE CLLAFYPEKS GRLVGLYLPM LDPLGFICCL 420
  421 SCVSSNFAGH TKKITTNAMY LIAYCTGNLI GPQTFVSSQA PQYIGAKVGM IAGSSVALLS 480
  481 LICLYFSYVW ENKKRDSRTM VDMSHIENYE FADLTDKQNP NFRYSK