YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4682, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.82
Transmembrane Helix	55	75	0.63
Non-Cytoplasmic	76	112	0.63
Transmembrane Helix	113	132	0.75
Cytoplasmic	133	137	0.67
Transmembrane Helix	138	158	0.89
Non-Cytoplasmic	159	164	0.61
Transmembrane Helix	165	186	0.70
Cytoplasmic	187	195	0.78
Transmembrane Helix	196	216	0.90
Non-Cytoplasmic	217	239	0.89
Transmembrane Helix	240	260	0.90
Cytoplasmic	261	327	0.95
Transmembrane Helix	328	348	0.84
Non-Cytoplasmic	349	368	0.69
Transmembrane Helix	369	392	0.79
Cytoplasmic	393	400	0.75
Transmembrane Helix	401	422	0.83
Non-Cytoplasmic	423	438	0.76
Transmembrane Helix	439	461	0.78
Cytoplasmic	462	468	0.55
Transmembrane Helix	469	488	0.77
Non-Cytoplasmic	489	506	0.64
Transmembrane Helix	507	527	0.95
Cytoplasmic	528	612	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGSTQEKNQ ETYSVDSLEH KYNSSPSASI EHEEKPSKKS KFRWSVDLSD HPPEIFNLTL  60
   61 YLSIFVFGVL GASRGLEEGN SGSNTKLGSF KKQFGLADKT KTEDQLANLK SNITSMVMLG 120
  121 SIGGALIAMK TVDFFGRIRA LQIVCVVLIV GVIIQITSNS IGQLYAGKII EGLAVGHTTS 180
  181 IGPVYLSEVA PSPIRGLATC IFSGAVYLGS MISYFTNYGV ALHVPAEKNG HINKNQWRIT 240
  241 LAPKLILSGL IFIMSFVFCI ESPRWLLKTN KPDKAAENLS KLRRLPADHP YIIAEISDIN 300
  301 EQVIAEKEAT NHSSLLSNFK ALVSNKSIAY RFFVISCGCQ IIGQWTGANA VTVYASELFS 360
  361 LIGVTGTGTL KMSAVLGVVK FISAYLSAFF LIDVIGRKRA LYTGLSLQMT CILYYAIFLT 420
  421 IVPQAAEEGV DLSGSKKRAA QGALAAIFLS GTGWTMGFNS VQYLIGAEIF PLGIRSFAQS 480
  481 LVMVLHFANQ YGNSKALPKM MLAMHPYGAF YFFVGVMIIG LVYAFFLPEL KGRSLESIEE 540
  541 VFTLPWYNLR HCNRLIADHS QIHKIKYTHD EQGNTDFNHI QYELDSGKPT DQFVENLMES 600
  601 ESVNRESVGH KV