YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.12068, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.68
Transmembrane Helix	8	26	0.93
Non-Cytoplasmic	27	43	0.73
Transmembrane Helix	44	66	0.88
Cytoplasmic	67	84	0.73
Transmembrane Helix	85	105	0.89
Non-Cytoplasmic	106	144	0.73
Transmembrane Helix	145	166	0.93
Cytoplasmic	167	183	0.81
Transmembrane Helix	184	205	0.92
Non-Cytoplasmic	206	219	0.82
Transmembrane Helix	220	240	0.92
Cytoplasmic	241	473	0.88
Transmembrane Helix	474	497	0.85
Non-Cytoplasmic	498	531	0.52
Transmembrane Helix	532	550	0.54
Cytoplasmic	551	564	0.69
Transmembrane Helix	565	589	0.90
Non-Cytoplasmic	590	600	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALHQFDYLF AIAMIFAFLD AWNIGANDVA NSFSSSVSSR SLKYWQAMIL AAIMEFLGAV  60
   61 LVGSRVSDTI RNKIVDIAVF KNEPAVLMLT MTTALIGSST WLTIATSIGM PVSTTHSIVG 120
  121 AVIGASIAAK GAENIIWGWK GVAQIIASWF IAPAIAGAFA SIIFLISKFG VLEVKNPRTS 180
  181 LRNAMLLVPL LVFVAFSILT MLIVWKGSPK LKLNTLSTGT TVGAIFGTGG VATAIYFLFA 240
  241 YPYYKRKLVY EDWTLKWYDI FRGPIYWFKS TDNIPPIPEG QTLTKDYYKG RRYDEAGNLV 300
  301 VLQTDRDVSA GVVEAHDGED SNSDGEKTSA VIQNQPAPVD SEKQPAPPAA GTAEYKGENT 360
  361 RWPNKFAGYV KLVKESPKNW PLVFFLLLTH GVRQDIIANQ AGSKDVLAGD LHKMHTASKY 420
  421 YDNKIEYMYS LLQAITACTM SFAHGANDIA NATGPLATVY LVWTTNTTAS KAEVPVWVLC 480
  481 YAAGALVVGL WTYGYHIMAN LGNKLILQSP ARGFSIELGA AVTTVMATQL KIPISTTQSA 540
  541 VGATVFVGLC NREWKSVNWR MVAWCYLGWI FTLPCAGLIA GIINAIILYA PSKGVSYTMT 600
  601