YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.9160, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.90
Transmembrane Helix	20	39	0.93
Non-Cytoplasmic	40	82	0.97
Transmembrane Helix	83	104	0.90
Cytoplasmic	105	113	0.79
Transmembrane Helix	114	133	0.93
Non-Cytoplasmic	134	141	0.77
Transmembrane Helix	142	162	0.91
Cytoplasmic	163	171	0.81
Transmembrane Helix	172	193	0.92
Non-Cytoplasmic	194	200	0.83
Transmembrane Helix	201	222	0.93
Cytoplasmic	223	304	0.99
Transmembrane Helix	305	326	0.93
Non-Cytoplasmic	327	342	0.89
Transmembrane Helix	343	366	0.89
Cytoplasmic	367	373	0.89
Transmembrane Helix	374	393	0.95
Non-Cytoplasmic	394	399	0.81
Transmembrane Helix	400	422	0.90
Cytoplasmic	423	440	0.72
Transmembrane Helix	441	459	0.70
Non-Cytoplasmic	460	460	0.45
Transmembrane Helix	461	486	0.70
Cytoplasmic	487	503	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNPTSIHNF LDKRHSITPL LGWSTFIICL SALQFGYHLA ELNAPADVLS CNVKKPGPLP  60
   61 SYNNTIWSHF HFNQCINMTE QGVTLITTMF TIGGLLASII LGTTSISTNY GRKHLCVVAA 120
  121 LFYVSGSFLM SFSQTNWQIN LGRLLNGFGA GSSLIVSPIL INELAPLNHR GLLGSLMQSA 180
  181 VSIGIFIAQI VSYLYSNDQQ WRLIFLVAGL IGFVQFVGLL TVPESPKWLT MAKNDVERAT 240
  241 LILKGLRTDE STVDYEIHHW GNLTTTNLPD DETSSLLSDD SLSSRNPPSI PTKDFIMERK 300
  301 YRKQLIAVVL IMTGQQLVGI NAITYYGVKI LNELFSGSNT GNLVLMLNCV FSGMNVAASI 360
  361 AVAPLIDRWG RKPLLMTSIT MCAICTSILA IGIPNRYDIA VVTACIGFVT GWALGLGPLP 420
  421 FLMISEFTGH DVVATAQSLG TVMNWSSNMF IAILFPFLTN ILGIGMVFWV FVINSLVYGF 480
  481 GFYHYVPETK GFTHYRDVWE HFS