YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.9157, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	102	0.92
Transmembrane Helix	103	126	0.80
Non-Cytoplasmic	127	143	0.88
Transmembrane Helix	144	166	0.86
Cytoplasmic	167	174	0.80
Transmembrane Helix	175	193	0.89
Non-Cytoplasmic	194	201	0.63
Transmembrane Helix	202	224	0.89
Cytoplasmic	225	230	0.84
Transmembrane Helix	231	254	0.88
Non-Cytoplasmic	255	262	0.79
Transmembrane Helix	263	282	0.96
Cytoplasmic	283	321	0.98
Transmembrane Helix	322	346	0.84
Non-Cytoplasmic	347	356	0.81
Transmembrane Helix	357	376	0.90
Cytoplasmic	377	384	0.80
Transmembrane Helix	385	404	0.95
Non-Cytoplasmic	405	410	0.80
Transmembrane Helix	411	433	0.91
Cytoplasmic	434	446	0.82
Transmembrane Helix	447	470	0.89
Non-Cytoplasmic	471	479	0.80
Transmembrane Helix	480	498	0.95
Cytoplasmic	499	510	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTHTLDNV SLSNQPDDSE HYRSNIELQS LRKSTEDSIA VVENEVPSTP VEEPSEYMIR  60
   61 RREGSHVAPA IESPGDSPRY DSRALMYGSE KDHSSFPDGG TQANLVLLGS FIGLIADFGI 120
  121 ANSLGAIESY VSSHQLKDIS KSQVGWVFSL HLGCMYWFGV FFGEFFDKFG AKRPLIAGNF 180
  181 FMCLGLLCTA ESRSLYQFIL SFSIVTAIGT SLAMSPLIGV LSHWFLKKRA IACSVATIGG 240
  241 LVGSSCFTIM LQQLYGAIGF KNAIRILACI CFLLMAVSTI LVKERKVANE SEESEEKLSI 300
  301 VTRAVQFFQG ALDFSALKDM KFVSLCFAIF LSEVISMTTL TYLASYALTY NIDETKSYLM 360
  361 LTLVNVCGIP SRLLSGLLAD KYGRFNVMCL SATLTTVFIF GLWYPANNMA LLFAFSILFG 420
  421 ISSSAVISLI PACTGQICSA ERFGKVYGTL YFFLGFLTIL GMYLATLVIA EGTQESYSHF 480
  481 VLFEGALSAL SIVVWIWARF SAVGWKWCKF