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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.1490, orf1...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.84
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLANVKLNLV TALYVLSYVS VVNAYQQENE ITPADNIDKR AGAIGNFFRD FTNSIFGNDN  60
   61 SEVNQPSTNG ATSTGHFFGP SIPSTSTHQQ TPGETSNNVN TKSSSQNQSP STSPTSTVAA 120
  121 AAATSSSPVA STRPASTSEQ KQQEETTARQ STSPATTATT SNTPPSPSTS KETPTSNTAQ 180
  181 TSSANNNQQS SNTAAPSTSV IQPSTSEVHV QSQQTSTTPN TPTSSPNTPT TSEAAPTTSA 240
  241 APTTSEAPVT PSTSEVVPNT PTTSEAPNTP TTSEAPVTPS TSEVVPNTPT TSKAPNTPTT 300
  301 SEAPATPTTS EAPNTPTTSE APVTPTTSEV VPTTSTQGDA VSTSSTSVTE QTTLTSSTQL 360
  361 PPTTASTTQT STPEASDSPK PSSTSIETPS TSTFEQDPTT TSSVGTPSSE QPQPTTTSES 420
  421 AVTSNSPTQE STSLVEPTTS SLESSNTPTP NPSTSEAQPS TSASQAPPDT TSSAPAPELS 480
  481 SSNADFSNSV LHSSETTSLV NPTDSQIDSS STTDAVSQAT TEPTSENTPT AASSVTANDI 540
  541 NSAQSSAPTS NADAETASSP VSEQSLATGS QTSLDTTAGA SSTASEATAE NLSTFGTDGS 600
  601 SDASQTIAET TSNSPDQSVV TPSASASPDV STLPTGSESG TSLVSGSETS IDTNTVASGS 660
  661 TVIPESSNIP TQSPSQSVVS SDAAASNVST GSATTDSLAG SETGVQPISS SATGTSEPVF 720
  721 SSEYNSSEGT TSLVVPTNSE LSSTVTGSSE TAATAINSES VLTGSSDTAA TVTGSESILT 780
  781 GNTETSATAI ASESTLTGST TGATDSAATT IASESVLTGT SDASATVIPS ESALTGSTTT 840
  841 PIASESVLTG TTSADVSGAT TIGSESIFTG TTESTGTPLP TASGTESLDT TVATGTSVSE 900
  901 QSGVETALST QPTTGTEATV TSGVSQSEQT GTSAVTGVTE SSEQIQSGAT TPATTTASDA 960
  961 TAVTNASEAS AESQATTTAA SEATTGSQVT TAASEAATES QATTAASEAA TESQATTAAS1020
 1021 EAATESQATT PASEPATGSQ VTSEVTPATV PSSVTAADTA ATSIITSPPA SAEPSSEVTA1080
 1081 VAPSAATTSS TKNWLPSSLV IAETPSSNAS KSTESIVQAS ATGASTSGLP RAITPETTTT1140
 1141 PGFDYQVITV GFKSALNYPF VVENSISSAQ IFQYLPRVLK YPFNGDKSLQ NVSVRRLIPY1200
 1201 TASNIDYTIT VAEVYFPKDS VKALGSFITT PGSAIYRNPD SVLQALASLI DSRIPLTGLV1260
 1261 TDDQQVSGSS SDSNPSTNSY GSMDIVSNTK VADKGRIAGI TIGAAAGCGL YMTLMVLLFR1320
 1321 KFRKSNKALE LPITDSESNL GFSDEDSSML ESSSGFSAIF SRINHGGVLT GDPNGGGDDM1380
 1381 MMMNNNNNNL RPNNISEPVQ ASNSLGWYH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle