YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1478, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.87
Transmembrane Helix	21	43	0.84
Non-Cytoplasmic	44	87	0.81
Transmembrane Helix	88	110	0.85
Cytoplasmic	111	121	0.72
Transmembrane Helix	122	143	0.93
Non-Cytoplasmic	144	149	0.77
Transmembrane Helix	150	169	0.90
Cytoplasmic	170	177	0.63
Transmembrane Helix	178	211	0.61
Non-Cytoplasmic	212	215	0.55
Transmembrane Helix	216	238	0.84
Cytoplasmic	239	247	0.78
Transmembrane Helix	248	268	0.92
Non-Cytoplasmic	269	274	0.84
Transmembrane Helix	275	294	0.93
Cytoplasmic	295	305	0.89
Transmembrane Helix	306	332	0.88
Non-Cytoplasmic	333	366	0.94
Transmembrane Helix	367	387	0.93
Cytoplasmic	388	395	0.83
Transmembrane Helix	396	416	0.80
Non-Cytoplasmic	417	417	0.34
Transmembrane Helix	418	436	0.64
Cytoplasmic	437	473	0.50
Transmembrane Helix	474	498	0.71
Non-Cytoplasmic	499	751	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTISSKPQ LKVLGIDVES IRVLLKVIIF ISIAGAAISS RLFSVIRFES IIHEFDPWFN  60
   61 FRATKYLVTH SFYEFLNWFD DRTWYPLGRV TGGTLYPGLM VTSGAIWHIL RDWFALPVDI 120
  121 RNICVLLAPV FSGLTAICTY FLTKEMKDSS AGLLAAIFMG IAPGYISRSV AGSYDNEAIA 180
  181 ITLLMATFYF WIKSMKMGSV FYATLTALFY FYMVSAWGGY VFITNLIPLH VFVLIFMGRY 240
  241 NAKLYTAYTT WYALGTLASM QIPFVGFLPI RSNDHMAALG VFGLLQLVAF GDYVKSKVPT 300
  301 KQFKSFLIVS IVLVVGLGIG GLFGLTAMGW IAPWTGRFYS LWDTNYAKIH IPIIASVSEH 360
  361 QPTAWPAFFF DTSMLIWLFP AGIYLCFQEL KDEHVFIIIY SVLCSYFAGV MVRLMLTLTP 420
  421 VICVAAAIAL SKLFDVYLDI VDLFTEKVGK YDDDVSDESK SSTKKSSSRF PIAGYLSKVL 480
  481 VLSTFTFYLF YFVLHCTWVT SNAYSSPSVV LASRNPDGSQ HIIDDYREAY YWLRMNTPED 540
  541 AKVMAWWDYG YQIGGMADRT TLVDNNTWNN THIATVGKAM SSPEDVSYEI LRQHDVDYVL 600
  601 VIFGGLLGYS GDDINKFLWM VRIAEGIWPD EIKERDYFTD RGEYKVDKDA SSAMKNSLMY 660
  661 KLSYHRFTEL FGGRDGVDRV RNQQIPANEV PKLNVVEEAF TSENWIVRIY KVKDLDNVGR 720
  721 DLHQATAFEE SSSGTSKRNR SIKRPKLEVR E