YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5023, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.86
Transmembrane Helix	58	73	0.60
Non-Cytoplasmic	74	96	0.64
Transmembrane Helix	97	118	0.69
Cytoplasmic	119	126	0.70
Transmembrane Helix	127	145	0.94
Non-Cytoplasmic	146	152	0.76
Transmembrane Helix	153	177	0.85
Cytoplasmic	178	186	0.85
Transmembrane Helix	187	208	0.93
Non-Cytoplasmic	209	216	0.89
Transmembrane Helix	217	240	0.91
Cytoplasmic	241	285	0.96
Transmembrane Helix	286	305	0.95
Non-Cytoplasmic	306	324	0.85
Transmembrane Helix	325	346	0.94
Cytoplasmic	347	352	0.85
Transmembrane Helix	353	373	0.95
Non-Cytoplasmic	374	378	0.78
Transmembrane Helix	379	401	0.88
Cytoplasmic	402	414	0.80
Transmembrane Helix	415	436	0.90
Non-Cytoplasmic	437	444	0.89
Transmembrane Helix	445	467	0.94
Cytoplasmic	468	509	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNGKTDLE KSGARVSVTA STVSENQTTG FELYEKAQEL SFEEEEAIRK KVVWKVDMRI  60
   61 VPLLCITYTL QFLDKLSLNY AAAYTLKEDL NLYGQRYSWC AAIFNFGYLA GALPANYVIQ 120
  121 KLPVAKFTGC MLFLWSIILI GHIGLQNYGG ILVIRFLLGL FESMISPSCM AICNNFYTVK 180
  181 NQPLRMCIFL SFNGVATIVG SLLSWGLGHA DESKLKIWKL IFLVIGLMNF VWSGIFLWLC 240
  241 PDSPKSVKFL TEDEKAVLIK EVATNNQGLG ETRFKKSQAV EALQDLFVYF VALIGLACGV 300
  301 INGGTSNFAS SLIKGFGFTG IQATALQMPL GAVELVVVVA AGIVVFTVKN MRCIVLFVIC 360
  361 IPPLAGLIGL HVIPLTHRWA LVGCSFLQFI IGGPVILCWI LSNANVSGSS KKTIANGIWF 420
  421 VMYAAGNIIS PNIFYAREAP KYRSGIIGLI SSYCGIMVLA IAIRLVFMHR NRKRNLEQGG 480
  481 YNEQIAEQAV LDGFKGLTDF ENAGFRYSL