YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.11428, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSNKFNRLG PLVIQNSSHK YPGVRNFSID HNAIINTMTS SFQTVHEFSG LPWWALIPLT  60
   61 TFTLRSVWTL PLAILQRKRI QKQSQLRPLV SAMNPILKLN LARRVQQAKK KLENNSNTKE 120
  121 DITSIQASST LINMKYEQIL LLSAKEARKR QKELFAKNGV QLWKNFILPA FQVPLWIMMS 180
  181 ITMRDLSGWS SWDNTHNKAL DPSLYEEGIL WFQDLSIADP MHVFPVILGI TALCNIEWTL 240
  241 KTLELSRLTK KLKFRPTLTD AFGNLTKMSI VFMMAISLHA PAALTIYWIS SQLYSLLQNV 300
  301 MMDLMLPISF TPKKRINYAK IKNDNAVNVI N

Type	Start	End	Confidence
Non-Cytoplasmic	1	50	0.78
Transmembrane Helix	51	72	0.80
Cytoplasmic	73	161	0.97
Transmembrane Helix	162	183	0.87
Non-Cytoplasmic	184	220	0.94
Transmembrane Helix	221	240	0.93
Cytoplasmic	241	262	0.88
Transmembrane Helix	263	289	0.77
Non-Cytoplasmic	290	331	0.57