YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG8_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.86
Transmembrane Helix	44	64	0.76
Non-Cytoplasmic	65	134	0.76
Transmembrane Helix	135	157	0.71
Cytoplasmic	158	168	0.92
Transmembrane Helix	169	190	0.92
Non-Cytoplasmic	191	226	0.93
Transmembrane Helix	227	246	0.95
Cytoplasmic	247	266	0.91
Transmembrane Helix	267	288	0.92
Non-Cytoplasmic	289	305	0.91
Transmembrane Helix	306	326	0.88
Cytoplasmic	327	378	0.93
Transmembrane Helix	379	397	0.90
Non-Cytoplasmic	398	403	0.73
Transmembrane Helix	404	423	0.73
Cytoplasmic	424	443	0.67
Transmembrane Helix	444	465	0.83
Non-Cytoplasmic	466	517	0.53
Transmembrane Helix	518	539	0.89
Cytoplasmic	540	553	0.49
Transmembrane Helix	554	578	0.86
Non-Cytoplasmic	579	587	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKKSTGPQ PSLSSSPNGR AKVTAETITT TTTTTTDTTN SYSLLNIWVI SLALKILLFI  60
   61 GYHSTDFDVH RNWLAITNKL PISQWYIENT SQWTLDYPPF FAYFEYLLSL LVPRFVANDG 120
  121 CLDIVEIGQY GLPTIYFQRL TVIISELVLF YALQTIVKTS PTLSAKRRMY VATASLALSP 180
  181 GLILIDHIHF QYNGMMYGIL LLCINSARLQ QYLLCGFWFS VLLCFKHIYL YLAPAVFIFL 240
  241 LRGYCLKFNW NKRKNFFINI FNFIQWINLF KLGSIVILVF IIAFGPFYNV LPQLISRLFP 300
  301 FSRGLTHAYW APNIWAVYSF LDRILIQIYK KIPMSKYPLL KIFQFDPNSL NNDQLLKTST 360
  361 RGIVGDIEFF ILPNITPKLT FLLTLFYQIM ALIPLFIQPT YRRFVGALTL CGYASFLFGW 420
  421 HVHEKAILLV IFPMTLLVAR DQKLLTPFNL LVSCGYGSLF PLIFTCNEWL IKVVYTYTWY 480
  481 IIFYFNFRKV VRPSKNNIIG NGIGNGNGKG GGIILDRMVN LYILLFNVVV IITSLFDLFK 540
  541 HKYPVLQNFE FLNLMIYSVY CAIGIISSWN GFCWLYFIDD GIWNQDQ