YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.2751
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	85	0.99
Transmembrane Helix	86	107	0.88
Non-Cytoplasmic	108	126	0.87
Transmembrane Helix	127	149	0.91
Cytoplasmic	150	155	0.87
Transmembrane Helix	156	176	0.92
Non-Cytoplasmic	177	181	0.70
Transmembrane Helix	182	204	0.89
Cytoplasmic	205	213	0.71
Transmembrane Helix	214	234	0.92
Non-Cytoplasmic	235	243	0.81
Transmembrane Helix	244	265	0.92
Cytoplasmic	266	323	0.97
Transmembrane Helix	324	345	0.92
Non-Cytoplasmic	346	360	0.83
Transmembrane Helix	361	380	0.90
Cytoplasmic	381	389	0.80
Transmembrane Helix	390	411	0.91
Non-Cytoplasmic	412	417	0.79
Transmembrane Helix	418	441	0.92
Cytoplasmic	442	452	0.83
Transmembrane Helix	453	475	0.91
Non-Cytoplasmic	476	484	0.86
Transmembrane Helix	485	507	0.93
Cytoplasmic	508	515	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTSTTITPN ESNPQEYGPQ PIELTTSNSK DDQHNVNNND NCLNENNHSI ITRSITRSTT  60
   61 TISHQSSSLH LLDDPSKFPD GWNNRAMITL FGSFLGMIGS LGYVNSGGVI QSYISTNILI 120
  121 NDSQSSIGWI FSIYNFFAFG GILISGIIFD KFGCKIPIFV GVIIMFSGLL ATSFCHSLYQ 180
  181 FILAYSILAG LGTAFVFGPF VACLSHYFLH KRALVIGISY TGGGLGGVIY PLMCRSLFSK 240
  241 IGYGWTMRIG AFISLFCCGI GWLLVSDRHE EFSPDLEKKK KKINQEITTT SSNNSVIDRV 300
  301 ENEFISIIKE IFHSIDFKIL YKNLLFTVLV FGLLFNGIVF LISIVQLPSY AISHGFSEQQ 360
  361 SYLLLVVFNS FSIPGRIIPS YFADQGLGRF NTFCLINCFS LIAFVVIWLP FGNHLTALFI 420
  421 FAGCFGFSSG SVLSLTASLV ASIVKTSDVG KGLGTAFFIL SIADLFGIPI AGAIASGSKQ 480
  481 SYNNLVYFLT ACAAIGAIVS FISRYLYGGF NLNRV