YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.10218, orf...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLSVLFMAP FTRAHPTIFT QYNGGLDDQQ PVIKPPFRHS NGQETSDDDL VTFLIISSIT  60
   61 FASLVVVILL SLVIFWVVKR SRQLSQDELD REEENQAYLE LNSDEQELYF QSKEFLTNSP 120
  121 YLVGDLTLSQ ELSIQEKGIT AFEFQKDVVL TNNDLMILNK YELNFFQNFE CSTQTNLPIP 180
  181 MKNEVYYFES KIYSLPNPDE TIISIGLSIK PYPWFRLPGR HPHSICYDSN GYRRHNQPFP 240
  241 FTNDPPFPKL VEGDVIGVGY RTRSGTVFFT RNGKKISESK LGGHVKNFKI SNKGQLFPTI 300
  301 GANNVCSVHV NLGQMGFVFI EGNVKHWGYA PLEGNGPAPP VYNKYNSDIL LERSEIDDDD 360
  361 LSERENDFPP DFWAINGSEN EAARTVSPHA LDQDKFSYNA YSEVNSNDER ITLASLVPPV 420
  421 KPPSYNEELE EGNSSSTINP MLPEEQKQTE EDKKSNDRHS SEGVADAEDN QNIDAEVVEN 480
  481 DEVINDATQA EPFDITAENS NTVEADSINI NQTADVDNDT PE

Type	Start	End	Confidence
Cytoplasmic	1	52	0.86
Transmembrane Helix	53	78	0.86
Non-Cytoplasmic	79	522	0.89