YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.313
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	45	0.97
Transmembrane Helix	46	68	0.83
Non-Cytoplasmic	69	84	0.78
Transmembrane Helix	85	105	0.91
Cytoplasmic	106	125	0.69
Transmembrane Helix	126	145	0.76
Non-Cytoplasmic	146	174	0.80
Transmembrane Helix	175	195	0.93
Cytoplasmic	196	204	0.77
Transmembrane Helix	205	224	0.91
Non-Cytoplasmic	225	243	0.79
Transmembrane Helix	244	266	0.77
Cytoplasmic	267	282	0.83
Transmembrane Helix	283	306	0.91
Non-Cytoplasmic	307	334	0.90
Transmembrane Helix	335	356	0.85
Cytoplasmic	357	375	0.82
Transmembrane Helix	376	394	0.95
Non-Cytoplasmic	395	402	0.83
Transmembrane Helix	403	425	0.92
Cytoplasmic	426	460	0.94
Transmembrane Helix	461	480	0.90
Non-Cytoplasmic	481	496	0.82
Transmembrane Helix	497	517	0.87
Cytoplasmic	518	570	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKPKSFWKK LVVSMEVQPK GDLSTAQMFL YNHDLRPVEE ARREWAWYNY VFFWIADSFN  60
   61 INTWQIAATG IQAGGMNWWQ TWISVWLGYA LCGIFVSIGA RVGTLYHISF PVAARSSFGI 120
  121 YGSLWPVLNR VFMSCIWYSV QTAIAGPTFE LMLHSIFGKN LPQRIHDTIP DKDLTTFQFL 180
  181 GIFLFWLFQL PFLWFPPHKI RHLFTVKAYV APIAGIAFLV WTIVKAGGIG PVVHQKSKVH 240
  241 GSELAWVFVE STMNSLGNFA TLIVNAPDFS RFASQPSFGM KYLVYTLSIP ICFSITSLIG 300
  301 ILVTSASEAM YGKPFWSPLD VLGTFLNDYT PGNRAGVFFI SAAFALAQLG TNISANSLSF 360
  361 GTDCSALLPR FLNIRRGGYI CAFLALAICP WKLISTSSKF TTYLSAYSVF LSSVAGVVAC 420
  421 DYFYVRRGFI SLIDLYSLTN PDNKHQDSIY RYNKIGVNWR AYVAYICGIL PNIVGFVGAT 480
  481 ETHKVPIGAT QVYRLNFFMG FFTAWIIYSV LCYFFPVPTG TVKVGPFEKG WFEEWQDVET 540
  541 FDEELVVHEV HDGIEKIEYL EESVSSKKKI