YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PMT2_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	153	0.79
Transmembrane Helix	154	184	0.59
Non-Cytoplasmic	185	199	0.58
Transmembrane Helix	200	221	0.86
Cytoplasmic	222	237	0.84
Transmembrane Helix	238	262	0.89
Non-Cytoplasmic	263	288	0.84
Transmembrane Helix	289	308	0.95
Cytoplasmic	309	556	0.86
Transmembrane Helix	557	572	0.28
Non-Cytoplasmic	573	613	0.55
Transmembrane Helix	614	635	0.92
Cytoplasmic	636	653	0.70
Transmembrane Helix	654	673	0.92
Non-Cytoplasmic	674	680	0.59
Transmembrane Helix	681	700	0.83
Cytoplasmic	701	717	0.67
Transmembrane Helix	718	738	0.94
Non-Cytoplasmic	739	769	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSVEPNET EALLRKQNDL STTASIEEKY PHQQGEAAED DDDTLKRTQY DEAKETAESL  60
   61 KQVESILAPI VFTALSFFVR FYRISVNDHV VWDEAHFGKF GSYYLRHEFY HDVHPPLGKM 120
  121 LVGLSGYLAG YNGSWDFPSG EKYPDYIDYT KMRLFNATFS ALCVPLAYFT GKEVGFSMFT 180
  181 TWLFTLMVAL ESSYVTLGKF ILLDSMLLFF TVATVFCFSR FNNFNNKSQE FSRKWWKWIL 240
  241 LTGVSIGCTC SVKMVGLFVT TLVGIYTVVD LWNKLSDKSI SWTKYIQHWF ARIVALILVP 300
  301 IFIFMLSFKV HFDLLYKSGT GDANMSSLFQ ANLAGSDVGG GPREVSMFHS VITLKNQGLS 360
  361 GGLLHSHVQT FPEGSKQQQV TTYGHKDSNN NWIFQRARGQ PYYDTSGNTT DIEYIFDGMH 420
  421 VRLMHPQTGR NLHTHDIPAP VSKSEYEVAC YGNLTIGDPK DNWTVEIMEQ ASDEDKMRLH 480
  481 PLTSSFRLKN EVMNCYLGVT GTTLPQWGFR QGEVVCYKNP FKKDKRTWWN IENNRNAVLP 540
  541 PAPEDFKLPK TKFIRDFIQL NLAMMATNNA LVPDTEKQDD LASSFWQWPT LNVGIRMCGW 600
  601 GPENPKYYMI GSPATTWTST VGVILFAFIV LYYLIRWQRQ YVDFPSTNPH KLKLFLMGGI 660
  661 YPMFGWGLHF LPFAIMGRVT YVHHYVPALY FAMLVFCYEV ESFSSRLNKP NASPVSKLLY 720
  721 LAIYIGLLSL VAGTFWYFRY LSWGMEGPKE DWKHLKLLES WRVSDDQYT