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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HIR3_CANAL
Protein type: Transmembrane
Type Confidence: 0.81
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSNTENKS AEKVKEMFYP LLDDFCIALL YNEPDEKLLE TLHEIFSYIG SERLSRFVLE  60
   61 YSLTSRKESD DLSGLLPIDQ TVLSQYKTML EHLSSGKFPK LDLKHLSFLE PIRLDIFAQQ 120
  121 EKLASKKVAV IKSTSTKWVD LLDAINIHLK ENQDESKIED ANRPRIRIFE PYVLTEEPLD 180
  181 IVRIEFTKRG VAVPATETEV TKAQPEQIVQ ERKPEEDNRV QRSSKRLSKV EDEIPAVTLE 240
  241 SSHFLNMDYF RNQMNETIPN FEIFDVCSTY VEDGSGAQYI KDFKNIVSDW NDSYARAILS 300
  301 YDTAKSEDDN LKLLDLLSGY GKSEELKEKN IPPLGEIDIE FPELNYVEFK TYIIKHLLSK 360
  361 ILTTKWSDKL YEKFTEWIVQ FEGYIINDID VESAIGVLEV LVDISTSLES QIKDSINNKL 420
  421 NKAVVNSMCQ DLLRIKDKII RWINYIETFP INDLQVASRF KWCQIIKEKA ETKSWTENHP 480
  481 VKHKLQKLLG DAHFKINYPN YKNFIDFSKD SINSQLTIIS VLAIFWRILS TSSTEDNKEA 540
  541 IRLLEDILLD SNTEPSDAIL SIRNFLKQGS IDMKLSLWNI LLSFYQSSNS GDKLTVGFEE 600
  601 CVLFLNDYLV NEYVLLDEES RLVTLSRILG FYGSSISFVV TSLASTNWIL MHPIKVQTLR 660
  661 LFFELSLLFE INEEASYISS LATSIKSKST KSYHHLTNTL IKTIILILAS IQKSNPQILH 720
  721 SVIRLFHTQL GLIGICGHAG GSFLEIAQEY LKSLPNSDQD ICQIIKCKYH YSISIDGVVP 780
  781 ADHGTARLDE LNKNDCKELA SFVLPLCFSK GGSTLNNVPK HDIKLLIDEI YDVIGDPDFD 840
  841 SNEALGRNKA TLNYFLDNTR LTKRLFQEAF HGLVRLELGE AEEDKQFNGL YYIEGLLLFS 900
  901 SYKLRKKNMQ SRAVELESAI SLFENDIICG SNRFESWFLL GQSYGYLVED DLIWTADKLT 960
  961 ASDRKITTAN LQRKSLICYL MAINKSLDES IKDVIKPVVG NLMSLFAKEM FSAVCEPMSM1020
 1021 HAFKVQSHPR FINRVNGALF EPVSQFPAVD KTVCLKIIQQ SLQLSIKSSC REWSDYYYLA1080
 1081 KVQRKLDKPA GLVMETMASA CRSAFKNKHA DNIIEPHYNL VSFALKYVKS NRLDSKDALK1140
 1141 YLIEDPLIKL EVGEETDFIK LIIKALNKID SSDKKNWQHK AKYRLARLMQ EEYHDVKGAI1200
 1201 DQMSSFISLK TPNKALVSIW KPEPERPGKH FLYTFQYIHF YIELLKEIDD LDSLVAMLPK1260
 1261 LRRSNSVMIN LSIAWEILCS SVCKIIRESY GIGDNFEFTE NLINTLPYQT FAANVKLLPD1320
 1321 MMRRQSVPEN LKSVLCFLFT VNDIKKLNNG YGPTSFIDDT LVTLYFMIYL NYFEKSSTEV1380
 1381 TTDSPGLKKK IAKRDIFPLT NDILKAFKKD IEDVTKQKSY NELITAQKLK QGLNEDKSLE1440
 1441 NVPASANVNE IIVIDDDDDD NLSQEPATKK SKTESNS

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