YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.2020, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.99
Transmembrane Helix	47	71	0.83
Non-Cytoplasmic	72	99	0.92
Transmembrane Helix	100	119	0.94
Cytoplasmic	120	128	0.81
Transmembrane Helix	129	148	0.95
Non-Cytoplasmic	149	154	0.79
Transmembrane Helix	155	177	0.91
Cytoplasmic	178	186	0.87
Transmembrane Helix	187	209	0.88
Non-Cytoplasmic	210	219	0.86
Transmembrane Helix	220	239	0.93
Cytoplasmic	240	305	0.95
Transmembrane Helix	306	324	0.67
Non-Cytoplasmic	325	344	0.70
Transmembrane Helix	345	366	0.75
Cytoplasmic	367	372	0.93
Transmembrane Helix	373	393	0.94
Non-Cytoplasmic	394	413	0.87
Transmembrane Helix	414	437	0.89
Cytoplasmic	438	449	0.88
Transmembrane Helix	450	471	0.88
Non-Cytoplasmic	472	476	0.76
Transmembrane Helix	477	499	0.91
Cytoplasmic	500	550	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLDNSTENR DLEEKEEIPK NEHNEQGEQN ENNEHIPTLE DKPLKEYIGI SILCFLIAFG  60
   61 GFVFGFDTGT ISGFINMTDF LERFGGTKAD GTLYFSNVRT GLLIGLFNVG CAIGALFLSK 120
  121 VGDMYGRRVG IMTAMIIYIV GIIVQIASQH AWYQIMIGRI ITGLAVGMLS VLCPLFISEV 180
  181 SPKHLRGTLV YCFQLMITLG IFLGYCTSYG TKKYSDSRQW RIPLGLCFAW ALCLLGGMVR 240
  241 MPESPRYLVG KDRIDDAKIS LAKTNKVSPE DPALYRELQL IQAGVERERL AGKASWGALI 300
  301 TGKPRILERV IVGGMLQSLQ QLTGDNYFFY YSTTIFKSVG LNDSFETSII LGVINFASTF 360
  361 VGIYAIERLG RRLCLLTGSV AMSICFLIYS LIGTQHLYID QPGGPTRKPD GNAMIFITAL 420
  421 YVFFFASTWA GGVYSIVSEL YPLKVRSKAM GFANACNWLW GFLISFFTSF ITDAIHFYYG 480
  481 FVFMGCLVFS IFFVYFMIYE TKGLTLEEID ELYSTKVVPW KSAGWVPPSD EEMVRAKGYT 540
  541 GDIHADEEQV