YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7666
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	119	0.84
Transmembrane Helix	120	141	0.73
Non-Cytoplasmic	142	148	0.47
Transmembrane Helix	149	169	0.89
Cytoplasmic	170	176	0.51
Transmembrane Helix	177	198	0.49
Non-Cytoplasmic	199	210	0.49
Transmembrane Helix	211	233	0.69
Cytoplasmic	234	243	0.67
Transmembrane Helix	244	265	0.84
Non-Cytoplasmic	266	313	0.63
Transmembrane Helix	314	339	0.71
Cytoplasmic	340	352	0.49
Transmembrane Helix	353	375	0.88
Non-Cytoplasmic	376	384	0.45
Transmembrane Helix	385	405	0.92
Cytoplasmic	406	411	0.41
Transmembrane Helix	412	434	0.85
Non-Cytoplasmic	435	446	0.47
Transmembrane Helix	447	468	0.89
Cytoplasmic	469	477	0.39
Transmembrane Helix	478	500	0.91
Non-Cytoplasmic	501	523	0.46

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNHKNSGGL ATKDNVSITQ DEISHDEISQ SDTPYIDISL DIDEEEVQRR NNSKWFQVKK  60
   61 FWWDGTGKHP KEQQYLMKLD FFLLTSSCLG YFIKNLNQTN VTTAFVNGMD EYYGMNKNQY 120
  121 NYLLTMFTIG YIIGQIPSNM LLHKISIRYY LGGLEIFWAF LTLIMITVPS HKIKALYALR 180
  181 FLSGFTESAY FPCLEYILGA HYSKDEVSKR SAWFAISGNL SGIVSGPLQQ AIIKRFSKSG 240
  241 MPPFKWMFVF DAVISFPIGI YTVFANPNTP STTNSWYFTE DDKKVGLERR RLIGAEINTK 300
  301 TNYSWKKVKS FFNTWHIYVF PIVFLCYNNS CAAIGQPTFQ TWLKLTLKKP SSVYNSYPSI 360
  361 ISGVGIAMAL LFAYLNDYLG GRKNVWFVSG FFVPLIIGCA LLAKWNIPIG LHYLCYFLVG 420
  421 VPTSWGQPFI FSWINRLLYH NDMKRNFVVV VTNTLPYVTG AFVPIFVWNT NDKPEYFIGF 480
  481 SYTAALSALG LVATFVAHYL TIQDENGVTL KDLESYGSTE FSK