YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7549
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	116	0.62
Transmembrane Helix	117	139	0.84
Non-Cytoplasmic	140	145	0.40
Transmembrane Helix	146	170	0.77
Cytoplasmic	171	190	0.54
Transmembrane Helix	191	213	0.72
Non-Cytoplasmic	214	218	0.53
Transmembrane Helix	219	239	0.83
Cytoplasmic	240	251	0.83
Transmembrane Helix	252	275	0.91
Non-Cytoplasmic	276	575	0.93
Transmembrane Helix	576	596	0.91
Cytoplasmic	597	616	0.84
Transmembrane Helix	617	637	0.79
Non-Cytoplasmic	638	644	0.77
Transmembrane Helix	645	666	0.88
Cytoplasmic	667	672	0.90
Transmembrane Helix	673	694	0.92
Non-Cytoplasmic	695	725	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKELPSGYF QGPFRPYKTF QPSLTERPLS KFEQFAVFSI LLISLIRLYK LYIPDRVVFD  60
   61 EIHLIKYIKN YYDGSIFVDI HPPLGKLIYF YITKLFSFDK DFQIDIIGDL YPEDFPYLWL 120
  121 RLFSGICGIG HVLLTFFTLR ITCNSVISIV ITILICLENS MVTVSRLILL EGPSLFVQSL 180
  181 VIYNYKAFTT RIPFTGCWYF NLFVTGIALG LNISLKISGL FTFAWVGILT CVQLWEILGD 240
  241 LRISIWQFIK HLVLRVVAFI MVPLTIYCSV FYIHFENLPN EGPGSGFLTP HFRSTLDDYQ 300
  301 QQPLQVLYGS TITIKHNALE KYLHSHDLTY PRGSNLQQVT LYDFPDVNNE WVIETKQKYN 360
  361 EEKLMTDQRE VKDGDVVRLY HKATGHYLHV NDIRPPISEH EYSYEVNGNE TRGLLGNEDY 420
  421 EFKIRMLVKK PHAENDLPLI KLRTTETIFQ LIHQATRCNL MSHEQKLPDW GEYQNEVLCV 480
  481 KEPTIPNTLW YVESSSHPLL KDTKKLKTFP KFSFWSKLIE THKVMFNLNK GFTNPHPYAS 540
  541 KPLDWPLLSR GIAFFSNYNL KSIDEESSLI YYLGNVAIYY SVFFVGLIAI FKCAIYSFIK 600
  601 LNPYASPPSS SKSSPYANFY NNSWPYLVGW FINYIPYCLM SRNLYLHHYL SALNFGILLL 660
  661 SQYLNYRVAK NKIIGGIITA TIFVSAIYCF YEFIPITYGL PWTLDQCNSH KWFPNWDIDC 720
  721 MTYTG