YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114215706
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	116	0.98
Transmembrane Helix	117	137	0.93
Non-Cytoplasmic	138	148	0.80
Transmembrane Helix	149	172	0.86
Cytoplasmic	173	179	0.85
Transmembrane Helix	180	202	0.85
Non-Cytoplasmic	203	210	0.69
Transmembrane Helix	211	233	0.86
Cytoplasmic	234	243	0.66
Transmembrane Helix	244	266	0.86
Non-Cytoplasmic	267	273	0.86
Transmembrane Helix	274	299	0.85
Cytoplasmic	300	351	0.95
Transmembrane Helix	352	371	0.91
Non-Cytoplasmic	372	388	0.82
Transmembrane Helix	389	411	0.90
Cytoplasmic	412	428	0.93
Transmembrane Helix	429	450	0.94
Non-Cytoplasmic	451	458	0.83
Transmembrane Helix	459	480	0.89
Cytoplasmic	481	500	0.73
Transmembrane Helix	501	518	0.90
Non-Cytoplasmic	519	528	0.79
Transmembrane Helix	529	551	0.92
Cytoplasmic	552	564	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHYRFLRDSF VGRVTYHLSK HKYFAHPEEA KDYIVPEKYL ADYKPTLADD TSINFEKEEI  60
   61 DNQGEPNSSQ SSSSNNTIVD NNNNNDNDVD GDKIVVTWDG DDDPENPQNW PTLQKAFFIF 120
  121 QISFLTTSVY MGSAVYTPGI EELMHDFGIG RVVATLPLTL FVIGYGVGPL VFSPMSENAI 180
  181 FGRTSIYIIT LFLFVILQIP TALVNNIAGL CILRFLGGFF ASPCLATGGA SVADVVKFWN 240
  241 LPVGLAAWSL GAVCGPSFGP FFGSILTVKA SWRWTFWFMC IISGFSFVML CFTLPETFGK 300
  301 TLLYRKAKRL RAITGNDRIT SEGEIENSKM TSHELIIDTL WRPLEITVME PVVLLINIYI 360
  361 AMVYSILYLF FEVFPIYFVG VKHFTLVELG TTYMSIVIGI VIAAFIYIPV IRQKFTKPIL 420
  421 RQEQVFPEVF IPIAIVGGIL LTSGLFIFGW SANRTTHWVG PLFGAATTAS GAFLIFQTLF 480
  481 NFMGASFKPH YIASVFASND LFRSVIASVF PLFGAPLFDN LATPEYPVAW GSSVLGFITL 540
  541 VMIAIPVLFY LNGPKLRARS KYAN