YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5548, orf1...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.43
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSPSSLSP ATASSSGVNS PSDQPPLPPR VRKSYSRNGC RECKRRKIRC PEEKPYCSTC  60
   61 VRLGKQCSYP LAGEKVLRIS RRLIKEEIEN MGKSTQFLPV QYDIPRRIKP QTQSVIKPSP 120
  121 LNIENLINSN DFLNGADLNV LTADLNNLVS DIIEVSNIPI LEEDFQFDFL NEPIIVEQIT 180
  181 KNVPIDYIKL PRKHEQLYWE EFYNNFAQII EPFQAYDTKT KKTSNPARDI ILQTAATEPF 240
  241 LLAAILAEGA NTCYLKYKRP EDERAYGAYL SKCLKLLEPA RETDINANIE AVLLTLLLLT 300
  301 AATATSQTQK WRPHLMGAKS LLLKAINQNV SKKFVFCKYW FVSIEILAGL STNLGGTLQT 360
  361 DAEIDQLVTP GNEFEIEVLR DLGIISDQGF NILMGYDNTC LACFRDLLKI LNKKRLNMYI 420
  421 DTMSYVKLLS DFYNQANIVY IDSRGVIAEN ELTRYVPGLP IEELRINNAS YWISWQDISH 480
  481 QSYVLSSLIM ILTRFFVIDV SGLVDKVIQF IHYLNQFSDV QQHASPYLLL MIQWPLLVTG 540
  541 LSTTKLEQRH LLLKYFSMVG QIGAAAANVS IQILLKHWKG TIDIENDDTL IY

Type	Start	End	Confidence
Signal Peptide	1	17	0.58
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	523	0.90
Transmembrane Helix	524	544	0.54
Cytoplasmic	545	551	0.56
Transmembrane Helix	552	574	0.54
Non-Cytoplasmic	575	592	0.74