YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5537
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLIFLSLLL PVYADSWSKL GCYSSISVAE SKGSYMYQSS GYCEQQCAGY RVAALKNGNE  60
   61 CYCGDVDPTS QSNGCNIKCS GWPSDTCGGS SAYMVYINAD ADSQAQSSST SSTSTSSTSS 120
  121 TSSSKSTSSS SSSTSSSSTS TEQPSTTTIQ ATTTEQTTAE PESTEQPETT EKQQTTSSSR 180
  181 TTTQPRTTTV VSTSVQNGTP SVVYKTIVAT PSSNPSTSSS SSSSSSSSTT PPSTSTSSSS 240
  241 SETGSKDKGK NQSKSSVSGG TIAGAVVGSV AGTALVAGLV FLFCWYRRKK QDEYDDDVDD 300
  301 QFTLSGPKQE MEQHPYSTIG GGGAGGGGGA AMLDPNPFLI AGGYNNFDTS QQQTPRQQII 360
  361 SNGTVTGSGG YGHNHKISSS GTSGDGNHSF GSQTDTEFAF YDYSNSNNNN NNNNTTSPNI 420
  421 NNNNNNANNG LLHTDSPNPE FGRRRLSNGS LPDMIARNPG SLKVVNN

Type	Start	End	Confidence
Signal Peptide	1	14	0.98
N-region	1	5
H-region	6	11
C-region	12	14
Cleavage Site	14	15
Non-Cytoplasmic	15	260	0.99
Transmembrane Helix	261	284	0.91
Cytoplasmic	285	467	0.85