YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.6209
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	45	0.93
Transmembrane Helix	46	70	0.85
Non-Cytoplasmic	71	90	0.84
Transmembrane Helix	91	111	0.92
Cytoplasmic	112	118	0.62
Transmembrane Helix	119	138	0.87
Non-Cytoplasmic	139	147	0.68
Transmembrane Helix	148	166	0.94
Cytoplasmic	167	174	0.78
Transmembrane Helix	175	196	0.93
Non-Cytoplasmic	197	207	0.85
Transmembrane Helix	208	227	0.94
Cytoplasmic	228	247	0.89
Transmembrane Helix	248	272	0.88
Non-Cytoplasmic	273	310	0.68
Transmembrane Helix	311	333	0.90
Cytoplasmic	334	339	0.46
Transmembrane Helix	340	364	0.86
Non-Cytoplasmic	365	373	0.49
Transmembrane Helix	374	398	0.81
Cytoplasmic	399	409	0.48
Transmembrane Helix	410	435	0.84
Non-Cytoplasmic	436	451	0.51
Transmembrane Helix	452	471	0.36
Cytoplasmic	472	477	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKTKKNLSS EETTDSIELQ QPDTSPEQLE SATEKQEHDP DIDGGYAWII LFACVLFNFC  60
   61 TWGMNSGFAI YFANYLSQGT FKGADKMDYS YIGGMAFGVG IFFSPVITVL MGVLGFRSVL 120
  121 IIGNCLQFAS LMLASWSTKL WQLYLTQGLM QSFGLAFISI PTITILPQFF KKKRVLAGGI 180
  181 GSAGSGLGGI VFNLAMQKVV DTKNVHWALR AQSIIAFGLT WIAIVLVKTK NSKHNIQFKL 240
  241 FDFGVIKTAP FWLLIFFIIT CIFGYVIVLY TLANFTTSLG YTEREGSYVS ATIQIGSCVG 300
  301 RPLMGLLSDK YGGATVASVG YFIAGIFCLA MWIPARNLAT VIIFALIMGA IMGAIYGMIA 360
  361 PVVARLFGIS KMNVVFSQIW SFMGVAGLFS PVIGVKLTKG SGVGIDPTRY VNCSIFTGVC 420
  421 FIVCSATLLI IRGYVNARDR MMEKEGHTDS DLADYTGVTV PFGSVFPLCL AKSHEKI