YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.2492, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKGAAGMGS FLIISFCLLI PPFLWHIRSR NLPATILIFW LMYVDLTGFI STMIWSGDNF  60
   61 DEAWDGQVYC DIVGKLDAGS SVGKCCAIAC VIMNLYFVLC AKHPTLLEQG SWKKFAMDMA 120
  121 ICLINPIFVM AVHYIVTGSR YAIVKYQGCS TIYSATYASL LLVSIWTVLW SIVALIFAVL 180
  181 TLITFFRKRK DVKDILLCTN SGLNIKRFAR LLIFSFLIVF AMVPLSLYYF VSQAEVSKNP 240
  241 FHWDQVHNEE WNVIYFYDFG FFTFYDRLVN CILSVLAFII FGLGSDALDM YKSMFHKVHN 300
  301 RFWYKKTDEP YSQEQAIKSM EPQTKINSNK SQFSNTTSFT NTSTMRDIEN QFGDVMHQII 360
  361 SEENTSFRFE KQLQSSPATL VKEDGVPREL QSIIKDTDSS SDQIFYKYQV KSKSYDN

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.90
Transmembrane Helix	6	27	0.91
Cytoplasmic	28	35	0.86
Transmembrane Helix	36	56	0.94
Non-Cytoplasmic	57	79	0.91
Transmembrane Helix	80	100	0.89
Cytoplasmic	101	114	0.89
Transmembrane Helix	115	137	0.87
Non-Cytoplasmic	138	161	0.88
Transmembrane Helix	162	186	0.88
Cytoplasmic	187	207	0.97
Transmembrane Helix	208	231	0.88
Non-Cytoplasmic	232	263	0.96
Transmembrane Helix	264	285	0.87
Cytoplasmic	286	417	0.96