YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3321
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFLIRNTII GQTCNSKQIF YKHARTLAIK SSLTSSIRYP LQPSLHNNLN ANTINFPLVK  60
   61 SFIRHNSSKP QKSLSSPEQI KEKALETLEK SPATELVHKT AEEPKKSIWE KVKHEAKHYW 120
  121 DGTKLLGYEV KVSTKLLLKL MAGYELSRRE SNQLQRTIVD VVRLVPFAMF VIIPFAELLL 180
  181 PIALKIFPNL LPSTYESTVD RQKKLAKLKK TRKAASEFIK NTMAESGGLK LSKKITDQER 240
  241 ENFVQFFHCI SMGKNPDRQQ LIQVARLFKN DQVLDNLSRP QLVAMCNYMN LRPFGTDSIL 300
  301 RYQIRHRLLN IIKDDKVIDY EGVDSLSILE LQLACSQRGI KTSDKSPARL RDDLETWLDL 360
  361 RLRQKIPSTL LILSSAYTYG DKGNSIESYY DALLAVLSSI PDEVYNVAKL ELSDDSKLKL 420
  421 NILKEQEEMI EEENEREKDT VTKVKDKIKL DDYEETASEG IKIEADDPVE GKNGNETQKK 480
  481 EESSSTKESN QDKVSTSKEP TKKEEVKV

Type	Start	End	Confidence
Cytoplasmic	1	160	0.67
Transmembrane Helix	161	183	0.61
Non-Cytoplasmic	184	508	0.98