YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87045983, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.96
Transmembrane Helix	35	57	0.83
Non-Cytoplasmic	58	62	0.70
Transmembrane Helix	63	84	0.87
Cytoplasmic	85	95	0.84
Transmembrane Helix	96	118	0.92
Non-Cytoplasmic	119	137	0.88
Transmembrane Helix	138	161	0.88
Cytoplasmic	162	247	0.67
Transmembrane Helix	248	268	0.84
Non-Cytoplasmic	269	291	0.46
Transmembrane Helix	292	306	0.69
Cytoplasmic	307	307	0.01
Transmembrane Helix	308	322	0.78
Non-Cytoplasmic	323	341	0.50
Transmembrane Helix	342	364	0.68
Cytoplasmic	365	439	0.75
Transmembrane Helix	440	462	0.83
Non-Cytoplasmic	463	467	0.59
Transmembrane Helix	468	489	0.90
Cytoplasmic	490	557	0.49
Transmembrane Helix	558	579	0.74
Non-Cytoplasmic	580	613	0.50
Transmembrane Helix	614	635	0.85
Cytoplasmic	636	643	0.63
Transmembrane Helix	644	666	0.76
Non-Cytoplasmic	667	686	0.66
Transmembrane Helix	687	711	0.88
Cytoplasmic	712	718	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIETISNNE GIRQRSASES THTHTYLDQL DIPQITLRST IVGLLIGSLV LISNFQFGLQ  60
   61 TGWVSMMSLP AALLAFSIFK LLPISIAKNF TDVENVFVQS IAVAVGTGPL CYGFIGIIPA 120
  121 MEKFMTSEES GLGRPLTFGL GQLMIWSLGL GLFGVFFAIP LRKQVIVKEK LPFPSGSATA 180
  181 TLISVLHGSD IYQDKEEISE KLDIEEEEGR ETGSIATESE SLTQQSSKSQ LITTTNIQDD 240
  241 YDSNMRSLII TFIISATYTI LSFFLPILKK IPIFGNHLSV NYLWNFQPSP AYIGQGIIMG 300
  301 LPTVSYMLFG AILGWGILAP LAKHMEWAPG RIDDWINGGQ GWILWISLTV MISDSLVSFV 360
  361 VVSIKSINNA LDNFRQRRDL DQFLELQQSQ QSEYLLQDQE ETRSSTSSNE NPENSTYDGK 420
  421 RTQEDCKYTM EVPERHLVST KTTVIGIAVS TLLCIISLKL VFGNIVPIYA SLAAIILAMF 480
  481 FSILGVRALG ETDLNPVSGI GKLSQLIFAL IIPSNHPAKI LINLVAGGVA EAGAQQAGDL 540
  541 MQDLKTGHLI GASPKAQFIA QILGTLYSVG LSSIMYKVYN SVYKIPSDMF RIPTAVVWID 600
  601 CSRLVTGQGL PPHIREFALV LGVIFGIISL LKNTVPPTSS YHKYLVYLPS GVAVGVGIYN 660
  661 TPNFTLARFI GGLICYNWQN IGPNGKIGMI IFSSGLVLGE GLFSGFTMLL TSLGVKHW