YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5735
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFLRKRRSS EDEDDDDILN NDPTSSIHKS RKPPNTAFRQ QRLKAWQPIL TPKSVIPLLI  60
   61 LIAIIFTPLG IAIIYTTYNV QDLIVDYSKC NEASNSYENI PNKYTRYHFR GHSANPNFQW 120
  121 RFENNNTCVI QFNLAQDLKG PVYLYYKLTN FYQNHRKYVE SYDLEQLRGE ALSSDDVTDN 180
  181 CKPLKHRVYN GEEKLIYPCG LIANSYFNDT ISNPVLLNTR NGDNNETYIF SDKGISWPSD 240
  241 RSHKFKKTQY SPDEVVPPPN WDEMYPNGYT KDNMPDLQTW EHLQNWMRTA ALPSFYKLYG 300
  301 QNTTQSMSSG IYQISIKMNY PVEIFGGSKS IVITTNTIFG GRNMSLGVIY IIVAVVALVL 360
  361 GIAFLLQYLI KPRKMGDHDY LQDSNGGDIT TYRDQL

Type	Start	End	Confidence
Cytoplasmic	1	53	0.89
Transmembrane Helix	54	75	0.90
Non-Cytoplasmic	76	345	0.93
Transmembrane Helix	346	368	0.92
Cytoplasmic	369	396	0.94