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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.10766, orf...
Protein type: Transmembrane
Type Confidence: 0.94
Topology Confidence: 0.32
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRLKIGIRP QLIIIVCFAS LFSLLILGIV TGIYFSANLK NLRLERLLVI SQLKRTQVQQ  60
   61 AIQYIAYQVM TVSEVDSLTV PLSNYRAGNN SKAVFSEAQN YLQQYVLTTD SFTAARLYDL 120
  121 DLQVVASSFD NMTLISESAQ DVVYPLQPNR SMPPVLGTPS GLYFTGPIAN NSDNFNSRYF 180
  181 MGITVPVLSN SSIILSQPSI SGYLTIVAAA ESIRSALNST SEDDYQAMAV QPVYGDPQKG 240
  241 IDNLSQNAYN GDNEVIGFKL VFPVENSLLE AGTIYNINSS SSMKTALASN SGTATGVKSF 300
  301 FGKKVAIGFS RISVQDNLNW SIVIVQSNSV FNGPANKLRK ITIGVVIGIG AFMCFVTFPL 360
  361 AVWFIRPITK LKEATEAITK YKKEKLNSVN SNSPTSGSGS GSGSGSGSRA NSDSSADQSL 420
  421 SLDTGKRNSI NSSSFSSSYS TGIRLPARIP RSKKIFKDEL TELSEAFNIM TEELDKQYTH 480
  481 LEDRVKLRTK ELEASKIQAE AANEAKTVFI ANISHELRTP LNGILGMTSI AMEEEDPNVI 540
  541 HDSLKLIHRS GELLLHILTE LLTYSKNTLN RSKLEKSNFQ ILEIVYQVRS IFNKLAHDQR 600
  601 VNFKILVKPN IFRKLIIYGD SNRIIQIVMN LVSNSLKFTP VDGSVSVSFK LLGEYDHERS 660
  661 KKLDYKKVCI LNDSSSSTVA VPPPTPPSDT KPNPKPKSTP TPKPDPTRSH LVDHNNRSAN 720
  721 TTSPLTPVRK PTNQTKNKSI TNNVTKQNMK IRKKKKTNKN LHNNNNNNKN DNSDFLMNRR 780
  781 LSGSHKFNNT NDEELSPTAI EKNIDKYLTS SADSDNISVT TLSTVQYETT IFESQFKSKP 840
  841 LPALPVDAKP QVSGKIDEND VNDEDPSGGS IKDDDSEDTI NEKQGISSSP SSSSSSNEKQ 900
  901 ENSPRSNDST TVTVTRPRHN MMPSAQDFKS YPTFDKKPEY DSNMSNNEIV KNNRVYRIRN 960
  961 MYQPKVWVIQ IEVTDTGPGI EPALQEKVFE PFVQGDQTLS RSYGGTGLGL SICRQLATMM1020
 1021 HGTLTLKSTI GKGSTFTLTL PLPQTGEIMV PPEDMAEFCE DEFNPAAKIN RKVAFEDGDI1080
 1081 DTESQQQENP SSEEDTQGDR NVQSSTSSSP PNSSSTDSAL PASDSSDIGG TNKSKTTSHG1140
 1141 NNKNINAKKR IITNSSASST KGTKRHTNND GGGGVNGNHS DDNKDLTLTI DKPSLFTRGS1200
 1201 TGTANSGTTS SHSDKKILYP TPTTTTTTTT TTDHTTVLDD ISHLRVLVAE DNSVNQEVIS1260
 1261 RMLKQEGITN LTMACNGAKA IDFVKESIEN NENFDLIFMD VQMPEVDGLK ATKMIRKNLQ1320
 1321 YNKPIIALTA FADESNVKEC LNSGMSGFIT KPISKTNIKK VLVEFLSNEV VTS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle