YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.10742, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	69	0.97
Transmembrane Helix	70	87	0.86
Non-Cytoplasmic	88	107	0.85
Transmembrane Helix	108	128	0.83
Cytoplasmic	129	140	0.78
Transmembrane Helix	141	160	0.95
Non-Cytoplasmic	161	167	0.72
Transmembrane Helix	168	192	0.86
Cytoplasmic	193	201	0.94
Transmembrane Helix	202	223	0.94
Non-Cytoplasmic	224	235	0.84
Transmembrane Helix	236	256	0.95
Cytoplasmic	257	308	0.98
Transmembrane Helix	309	330	0.93
Non-Cytoplasmic	331	340	0.83
Transmembrane Helix	341	362	0.91
Cytoplasmic	363	371	0.93
Transmembrane Helix	372	393	0.92
Non-Cytoplasmic	394	399	0.77
Transmembrane Helix	400	421	0.91
Cytoplasmic	422	431	0.85
Transmembrane Helix	432	452	0.93
Non-Cytoplasmic	453	460	0.85
Transmembrane Helix	461	482	0.96
Cytoplasmic	483	521	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTKPTTSH VESDTKPDAD HLEIRKSNLS ESDLGVEEIS DLKYINLPPS LQHMTQEELR  60
   61 TLDKKTTRKI DLRLMPMLIF IYILNYLDRN NLASARLGGL EKDIGLVGNQ YQICISILFV 120
  121 GYILFQVPSN MLLNKMGRPS IYLSVVMTIW GAISTATGAV QSFGGLVAVR VLLGVVESAF 180
  181 FPGALMILSS WYDKKTLASR NSILYAGSLI SSAFSGLIAA GILKMDGLGG VQGWRYLFII 240
  241 EGGITVLTVP FAYFILPDNP SNTKFLSQEE KDIIMWKMKR DLGNVNDSDK EAQESEIQGF 300
  301 MHACKDIKVW LLCAIHSFLV AACGVTNFFP SVVQTLNFDR TTTLCLTAPP YVIAVVATYL 360
  361 WAKHADHSGE RFYHVTIPLV LSLVAFIISA ASLNTGARYF SMCLMIPSLY CAFVVILTWI 420
  421 SNCCPRPPAK RAAAIAIVNC LSNSTSIWNA YLYPSSDAPR YLVAFCCNSA FIVLSILFAV 480
  481 GLRIRLTVLN KRIERGTMDW QKELGKGNDG SKISPDFRFL Y