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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.5383, orf1...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATEPTNEK VDKIVSDDED EDIDQLVADL QSNPGAGDEE EEEENDSSFK AVPEELLQTD  60
   61 PRVGLTDDEV TKRRKRYGLN QMAEEQENLV LKFVMFFVGP IQFVMEAAAV LAAGLEDWVD 120
  121 FGVICALLLL NAFVGFIQEY QAGSIVDELK KTLANSALVV RNGQLVEIPA NEVVPGDILQ 180
  181 LEDGTVIPTD GRIVSEDCLL QVDQSAITGE SLAVDKRSGD SCYSSSTVKT GEAFMIVTAT 240
  241 GDSTFVGRAA ALVNKASAGT GHFTEVLNGI GTTLLVFVIV TLLVVWVACF YRTVRIVPIL 300
  301 RYTLAITIIG VPVGLPAVVT TTMAVGAAYL AKKQAIVQKL SAIESLAGVE ILCSDKTGTL 360
  361 TKNKLSLHEP YTVEGVEPDD LMLTACLAAS RKKKGLDAID KAFLKSLINY PRAKAALPKY 420
  421 KVIEFQPFDP VSKKVTAIVE SPEGERIICV KGAPLFVLKT VEDDHPIPED VHENYQNTVA 480
  481 EFASRGFRSL GVARKRGEGH WEILGIMPCM DPPRDDTAAT VNEARRLGLR VKMLTGDAVG 540
  541 IAKETCRQLG LGTNIYDADR LGLSGGGDMA GSEIADFVEN ADGFAEVFPQ HKYNAVEILQ 600
  601 SRGYLVAMTG DGVNDAPSLK KADTGIAVEG ATDAARSAAD IVFLAPGLSA IIDALKTSRQ 660
  661 IFHRMYSYVV YRIALSLHLE LFLGLWIAIL NRSLDINLIV FIAIFADVAT LAIAYDNAPY 720
  721 DPKPVKWNLP RLWGMSIVLG VILAIGTWIT LTTMLLPKGG IIQNFGGLDG ILFLQISLTE 780
  781 NWLIFVTRAQ GPFWSSIPSW QLSGAVLIVD IIATCFTLFG WWSQNWTDIV TVVRTWFWSF 840
  841 GVFCVMGVTY YLMSTSEAFD NFCNGRKPQQ HTDKRSLEDF LVSMQRVSTQ HEKST

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle