YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87045971
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	214	0.50
Transmembrane Helix	215	235	0.64
Non-Cytoplasmic	236	241	0.65
Transmembrane Helix	242	264	0.84
Cytoplasmic	265	288	0.66
Transmembrane Helix	289	309	0.68
Non-Cytoplasmic	310	323	0.54
Transmembrane Helix	324	349	0.72
Cytoplasmic	350	383	0.62
Transmembrane Helix	384	404	0.90
Non-Cytoplasmic	405	461	0.45
Transmembrane Helix	462	484	0.85
Cytoplasmic	485	529	0.50
Transmembrane Helix	530	551	0.81
Non-Cytoplasmic	552	598	0.49
Transmembrane Helix	599	619	0.93
Cytoplasmic	620	624	0.44
Transmembrane Helix	625	645	0.92
Non-Cytoplasmic	646	652	0.42
Transmembrane Helix	653	680	0.68
Cytoplasmic	681	707	0.56
Transmembrane Helix	708	727	0.76
Non-Cytoplasmic	728	772	0.68
Transmembrane Helix	773	794	0.92
Cytoplasmic	795	804	0.85
Transmembrane Helix	805	825	0.78
Non-Cytoplasmic	826	853	0.82
Transmembrane Helix	854	876	0.92
Cytoplasmic	877	921	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTEKPIPAL PVTSITSHVD VAAHEVNLQA ITSNPLSIGE VGTTLTNGQK DFILKRLHYD  60
   61 SLVSFDKLPP QATFIFEKIE HISIEEALAI LEKAVVEHEN DVNILDNDEE LWTKLINYKQ 120
  121 GKIPSDTDFS EKAHPSNFTA KDKLSAFIHE KRVSEETSSL DNSASENLNE PYYKIVDWEL 180
  181 QVKLEAVLIA YWSPYPQVRG VTDPYDDPTI PVETVRVYIV AIIWTAIGAV INQFFSERQP 240
  241 SIGLGMSVVQ VFLYPTGLIC EWILPKWKFK VWKYTIDLNP GPYTFKEQML ATIFCGVSSG 300
  301 TSYVSSNILM QKSELFYDNK WVDFGYQVLL TLSTNFLGFG LSGIMRQFAV YPEKAIWPSI 360
  361 LPNVRLNKTL MSPEVKARIN GWSISGYNFF FITAGISFLY FWIPDYLFQA LSQFNWMTWI 420
  421 KPDNYNLAVV TGSFGGLGLN PIPSFDMNVI GTGGFIAPFY NTLESYIGMV LALFCILGVF 480
  481 YSNYKWTGFL PINSNRLFTN EGKPYHVTAV VNSNSLFDEE KYKEVGPPFY SAGNLVLYGA 540
  541 FFAIYPFHFV YEIAMNYKQM WEALQSLYKG IRNFKRSTYE GFDDPHSVMM RAYPEVPEWA 600
  601 YLIILVISLV LAILCVKLYP AETPVWGIFF ALAINFVFLI PLTTVQSRTM FGFGLNVLVE 660
  661 LIVGYAIPGN GLALAFIKAL GYNIDGQAQN FINDLKQGHY AKLPPRAMYR CQLLSVFITS 720
  721 FIQLGILNYQ ITGIKDYCVP GNKQKFTCPG TTTFYNASVL WGVIGPKKVF NGLYPILAWC 780
  781 FLIGFLLAFP CIAFKKWAPR KYSKYFEPSI IIGGFLGYAP YNLSYNTGGL YVGYAFMHYV 840
  841 KRKYEAWWQK YDYLLATGID AGIAFSSIII FFAVMYHEKD ISWWGNNVPF EGWDASMTNG 900
  901 YLNATLQAPD GYFGPRVGHF P