YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5065
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEETPNQTH EILFNDFIPL SFRITVAIHF GLILWLILNL LLTNFTSINV LHLLKLSYTP  60
   61 HNYTHLDDLS HNQDTNINTN NNHNHNHNQI ESLGEYAAFL PSDPHENDRL IKGIWSNLKF 120
  121 VSIINITCWI IYKSIANISW LTPLFYTLPL VSLFMTIYKL FFKNSYSSPG QIRIFTTIKR 180
  181 IIRGNINSQT MRTNDILISD SLVSYSRVIN DLGLVIWNYW FDSNIGYNYK FESMILSIPT 240
  241 WIRIKQCWYE YKLTGKTQHL FNLIKYSTGL GPLLINVLLK RMLLNATEQE KTSGELLLKL 300
  301 NHLNNWLYFA LAVNSTYSFI WDIKMDWHLE LFDGLFSVIS GKKTSHSVVS VSNYRFQILR 360
  361 KQLALPRSIY YIAIIIDFIL RYIWILKLFI INEELKKEKI KFIYIFSTFL FGYDAYSLGY 420
  421 ALIETLEIFR RWIWCFIKLE SDWVELYNDQ DLSNQDIELE TRLPKQG

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.73
Transmembrane Helix	21	45	0.79
Cytoplasmic	46	114	0.75
Transmembrane Helix	115	136	0.67
Non-Cytoplasmic	137	141	0.63
Transmembrane Helix	142	162	0.86
Cytoplasmic	163	304	0.75
Transmembrane Helix	305	321	0.62
Non-Cytoplasmic	322	367	0.73
Transmembrane Helix	368	385	0.92
Cytoplasmic	386	401	0.62
Transmembrane Helix	402	423	0.83
Non-Cytoplasmic	424	467	0.77