YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.553, orf19...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.99
Transmembrane Helix	69	91	0.92
Non-Cytoplasmic	92	104	0.90
Transmembrane Helix	105	127	0.89
Cytoplasmic	128	135	0.87
Transmembrane Helix	136	156	0.93
Non-Cytoplasmic	157	165	0.67
Transmembrane Helix	166	187	0.90
Cytoplasmic	188	196	0.87
Transmembrane Helix	197	217	0.94
Non-Cytoplasmic	218	223	0.84
Transmembrane Helix	224	244	0.95
Cytoplasmic	245	297	0.95
Transmembrane Helix	298	320	0.86
Non-Cytoplasmic	321	333	0.86
Transmembrane Helix	334	356	0.91
Cytoplasmic	357	376	0.92
Transmembrane Helix	377	397	0.95
Non-Cytoplasmic	398	403	0.83
Transmembrane Helix	404	424	0.93
Cytoplasmic	425	444	0.74
Transmembrane Helix	445	463	0.83
Non-Cytoplasmic	464	469	0.66
Transmembrane Helix	470	493	0.87
Cytoplasmic	494	505	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSVTNPEIM PKKEEPKQNE TEAETENKLS TADLKNGKSV SDSEKQNDLE GQTSQDSPYC  60
   61 ALSLKRKTII IGIVTIAGCL GPISGNIYIP ILPQLENEFH VSTQVINGTV SAFMFVFAIA 120
  121 PLIWASWADY GGRKTLYLIP LIFFILANIL LAATPANIVG LYILRVLQAF GASSVISVGA 180
  181 GTVADIIEPK HRAKAISVFM WGPQLGPVLG PVLSIIASKG QWRWIFGFLA LFGFAVYLMI 240
  241 LFFLPETLRY LVGNCACYKD TSIIVKPHLR QKKIVEGYPV PPKPSFKNYW ILIKFKPVLL 300
  301 CSINSGLLFA TFYGLMVTFA HVLKIEYSFT DAQISASYLC PGISLIIGST IGGWASDKIR 360
  361 AEIIKHNPDI YVPEYRFSLQ FLGLIISMTG VIGYGWTVHK HTNVVAVFIF TFLGGFGMTW 420
  421 VFVANTTYLT ECTTGQPATN VAIGNFARNI SATICTAVID PLISSMGFGW CLTGLGLTNI 480
  481 LGIVFVVILL KWGPSWRRQF LNKST