YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.538, orf19...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEIHISSSI LQDSDSAPPN HFQHAQQQEQ PSWKKLLYLQ QPFPDNYTDQ SFLSQLKRNT  60
   61 TVAKYSYKNL VQAFSFIVFY ISCILLVILM FIGIYEKQWD PIIPTLISTG ISLVGFFSLK 120
  121 NLSMNMRSLM VITFILLIVS PILKSLTKST SSDSIWAISC VLCLANSIFH DYSMKVSYRP 180
  181 IVSTNISLSN AIVLASRLST TLDVFLFVLF AIEVNILLPL FDAKIRLSGL ETIHWPIAFL 240
  241 TFNLTSYLMY ILLNYKFLVY WILSVFVMVV IMPIYFLSLQ RYKNEIQGPW DVAKPKLMKS 300
  301 SIQS

Type	Start	End	Confidence
Cytoplasmic	1	72	0.96
Transmembrane Helix	73	94	0.93
Non-Cytoplasmic	95	101	0.79
Transmembrane Helix	102	119	0.93
Cytoplasmic	120	127	0.72
Transmembrane Helix	128	147	0.87
Non-Cytoplasmic	148	153	0.76
Transmembrane Helix	154	173	0.76
Cytoplasmic	174	180	0.61
Transmembrane Helix	181	199	0.46
Non-Cytoplasmic	200	200	0.37
Transmembrane Helix	201	221	0.77
Cytoplasmic	222	231	0.53
Transmembrane Helix	232	251	0.90
Non-Cytoplasmic	252	256	0.55
Transmembrane Helix	257	279	0.90
Cytoplasmic	280	304	0.66