YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RFT1_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	22	0.81
Transmembrane Helix	23	45	0.70
Non-Cytoplasmic	46	51	0.61
Transmembrane Helix	52	70	0.89
Cytoplasmic	71	94	0.86
Transmembrane Helix	95	116	0.91
Non-Cytoplasmic	117	135	0.88
Transmembrane Helix	136	157	0.91
Cytoplasmic	158	172	0.90
Transmembrane Helix	173	193	0.92
Non-Cytoplasmic	194	199	0.91
Transmembrane Helix	200	222	0.92
Cytoplasmic	223	352	0.96
Transmembrane Helix	353	374	0.87
Non-Cytoplasmic	375	396	0.87
Transmembrane Helix	397	415	0.93
Cytoplasmic	416	425	0.79
Transmembrane Helix	426	445	0.93
Non-Cytoplasmic	446	451	0.77
Transmembrane Helix	452	472	0.89
Cytoplasmic	473	489	0.93
Transmembrane Helix	490	512	0.91
Non-Cytoplasmic	513	518	0.88
Transmembrane Helix	519	539	0.94
Cytoplasmic	540	561	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSSSKQPG NDANDANSSV KGVSHLIIVQ IIAKLLTFVL NQLIIRYLSP SIIGVTTYLE  60
   61 FICSTILFFS RESIRLSVQR VRNNSDNKDY VAQKVVNFGI LAIAFAFPIF MVIGYWQLNY 120
  121 SSVMDKLFVS PFYKPVIVLF VASVILELLV EPIYCLYQFQ LDFGKRSKFE GSAIFVKCIV 180
  181 SVLSILLARQ YFVDQKFEGV AICAFALAQF SYSLTLFACY LMSFRFEFQN NKINYNLVKL 240
  241 KDENAREFYF EQDTLTIVKG FFVQMIFKQF LTEGDKLLIS HLCTIEEQGM YAVMANYGSI 300
  301 IARLLFQPLE ESTRLMFTKL LNENTRSQGD EKPQKSESHK CMQTFNYLKL ISIFYFNLSL 360
  361 IILFAGVTSG PYLLKLLMGG RASNWESTDI FKLFPQYVVY LPFLAFNGIL EALFSSMATN 420
  421 SDLKNFSKFM TLITILVLIF SYLLIDVLNL RISGLILANV FNMSSRIGYC YFKISKFYSK 480
  481 ENVKVSFVDI VRYSCPSILI TSIIWIIQLF IIGKNTTNFV QLILNACFSF VLVIILMVME 540
  541 RKNSKKPFEK VTNKFMKPKL D