YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.11275, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.98
Transmembrane Helix	39	60	0.93
Non-Cytoplasmic	61	65	0.75
Transmembrane Helix	66	86	0.91
Cytoplasmic	87	105	0.83
Transmembrane Helix	106	126	0.91
Non-Cytoplasmic	127	145	0.90
Transmembrane Helix	146	168	0.90
Cytoplasmic	169	175	0.84
Transmembrane Helix	176	199	0.86
Non-Cytoplasmic	200	220	0.87
Transmembrane Helix	221	241	0.91
Cytoplasmic	242	259	0.91
Transmembrane Helix	260	279	0.94
Non-Cytoplasmic	280	309	0.96
Transmembrane Helix	310	332	0.90
Cytoplasmic	333	354	0.90
Transmembrane Helix	355	374	0.93
Non-Cytoplasmic	375	385	0.79
Transmembrane Helix	386	407	0.94
Cytoplasmic	408	427	0.93
Transmembrane Helix	428	450	0.92
Non-Cytoplasmic	451	460	0.84
Transmembrane Helix	461	481	0.88
Cytoplasmic	482	513	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPTKNLES IRSQELDSDH SISYDSTTGL KHGLKDRHLS LIALAGIIGP GIMIGASLAL  60
   61 ASGPAALLLG FGIIGIVAFC MMQSLGEIAT MYPTGATFST LGAKFVDYSW GGAVGWNYVI 120
  121 IWIAVLANEY NTTASVLQFW GPQVPLYGYV LILWAVFTAF QFLGVSVWGE FEFWLALTKI 180
  181 VGLVAFYIFS IIYCAGGVKG TKAFGFHYWN DPGPFANGFK SFVSTLTFAS TFYSGCEVTA 240
  241 IAASEAKNPS RALPKAIKQT FWRILIVYLG IAISYGLTVP YDDPRLSKGS KTLKSPMTIA 300
  301 IQRAGWDGGA HLINAFIIVV CISAISSSIY TGSRSMVNLA NEGCAPSILK RVNGQGVPYA 360
  361 AVILMSTLGL ISLMNQSTGA ANAYQYIVNL SGVAVFIVWG NVCFYHIRFR QAMKLQGRSL 420
  421 DEIPFKGMLY PYLPILGLAL NVILALIQGW SYFKPFDAGN WVDAYILLPF FFVLYFGFKL 480
  481 WHKSKWVNLE EVDLDEGRRE DDEKGVDNNK WMI