YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG14_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIETAACFS IAFIATPILI VLVRLLFILP SLRLPTSVKK KKKLIQECQL SILLGSGGHT  60
   61 GEMMRIISKL DMGKVSRTWI YTSGDNASLA KAQDYERKSG TSSQYIPIPR ARTVGQSYIS 120
  121 SIPTTIYSFL FSAIAMLKHR PAVILLNGPG TCVPVAYILF LYKLLGLCNT KIIYIESLAR 180
  181 VNKLSLSGLL LLPISDRFIV QWESLYQQYS RVEYYGILI

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.83
Transmembrane Helix	7	28	0.90
Cytoplasmic	29	116	0.84
Transmembrane Helix	117	137	0.79
Non-Cytoplasmic	138	142	0.74
Transmembrane Helix	143	165	0.75
Cytoplasmic	166	219	0.60