YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5307
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	72	0.94
Transmembrane Helix	73	92	0.80
Non-Cytoplasmic	93	112	0.84
Transmembrane Helix	113	133	0.93
Cytoplasmic	134	141	0.80
Transmembrane Helix	142	162	0.91
Non-Cytoplasmic	163	167	0.75
Transmembrane Helix	168	189	0.90
Cytoplasmic	190	200	0.78
Transmembrane Helix	201	222	0.84
Non-Cytoplasmic	223	230	0.84
Transmembrane Helix	231	250	0.91
Cytoplasmic	251	287	0.95
Transmembrane Helix	288	307	0.94
Non-Cytoplasmic	308	328	0.94
Transmembrane Helix	329	352	0.85
Cytoplasmic	353	358	0.78
Transmembrane Helix	359	380	0.84
Non-Cytoplasmic	381	443	0.65
Transmembrane Helix	444	463	0.92
Cytoplasmic	464	513	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAADTHSIT SADVQEHNRH IIRPPKFTWP AIRKYAITRV TSLWVGWDEL KQYSWHEVLN  60
   61 PFEPLVEMNL HQWNFFFLGF WAWTWDALDF FVTSLNVSNI AEDLDSTVKD VSWGITLVLM 120
  121 LRTVGALIFG AIGDTYGRKW PYIINLSCLM VIQIGTGFVT TFQQFLGLRA LFGVAMGGLF 180
  181 GICAAEALGD APKKARGVLS GIFQEGYAFG YLLAVVFQRA IADTTEKTWR SVFWFSAGPP 240
  241 IILIIWRFIN PETDSYQRQK ERFDQGAVQK NSKAAEFKSQ AKKALNQYWL IIVYLIFLMA 300
  301 GFNFSSHGSQ DLYPTMLTKQ YHYGKDKSTV VNVCANLGAL AGGIVIAHLS TFIGRRTAIL 360
  361 IGNVIAGIMI YFWAFHPMWI TAFFMQFGIQ GSWSVVPIHL SELSPPHFRS FVSGVSYQLG 420
  421 NLVSSASSTI EATIEEQIHD YGKTMAIFIG AVLAYLMFVV FIGPENRGAE LGVERDDEYS 480
  481 AYDSDREDRG DSDLEEGNIT QKTLEKPEVE HKE