YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573708
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	89	0.90
Transmembrane Helix	90	111	0.85
Non-Cytoplasmic	112	169	0.88
Transmembrane Helix	170	191	0.75
Cytoplasmic	192	384	0.79
Transmembrane Helix	385	405	0.90
Non-Cytoplasmic	406	411	0.49
Transmembrane Helix	412	432	0.64
Cytoplasmic	433	439	0.38
Transmembrane Helix	440	456	0.42
Non-Cytoplasmic	457	463	0.78
Transmembrane Helix	464	486	0.83
Cytoplasmic	487	510	0.85
Transmembrane Helix	511	534	0.76
Non-Cytoplasmic	535	575	0.89
Transmembrane Helix	576	597	0.91
Cytoplasmic	598	636	0.93
Transmembrane Helix	637	660	0.83
Non-Cytoplasmic	661	679	0.84
Transmembrane Helix	680	700	0.83
Cytoplasmic	701	857	0.90
Transmembrane Helix	858	882	0.88
Non-Cytoplasmic	883	914	0.83
Transmembrane Helix	915	931	0.62
Cytoplasmic	932	973	0.70
Transmembrane Helix	974	998	0.72
Non-Cytoplasmic	999	1018	0.79
Transmembrane Helix	1019	1039	0.92
Cytoplasmic	1040	1055	0.78
Transmembrane Helix	1056	1079	0.86
Non-Cytoplasmic	1080	1087	0.71
Transmembrane Helix	1088	1108	0.89
Cytoplasmic	1109	1139	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTDHTCRI CRGEATSSQP LYHPCKCRGS IKYIHQDCLM EWLKHSNKST EKCDICNSPY  60
   61 KFKIIYDPAM PQYIPLDLIW KKFLQITSST VFKSISISLY ILCIVIQVPL FWKFSGRVYT 120
  121 WAIDGTLPLV NQKFVDALLF GEFDINTYLA DKSQTPLQLS LMKLKKFFGY TYFSGVRYLF 180
  181 VAIVANIALF IEREWVVRDE GYLKMLHKKI GKEHRAKLVD MLQNALQGLR TDGNNGDEAA 240
  241 AANLQRLETL ATAINDLQNE DRDMNVAARG EAALRRAIDQ NQLFGNEQQP ILNQFENGIG 300
  301 QHDALPTHNF DAPENLMNGV FNGRNDIGSD DEEDEEQQEE EDDDEEAAVE EDVDVAAAAA 360
  361 AGADGGVVGE FLEAFGVTLT LSTPIYLMFL CNCIVAVYLF LIYLIPHMLG NTIVSITTFL 420
  421 FKLINVTLIS YISKHIPFPT YIYEFASSYI TSLGTFNPNK GVTLIERIFI LGLGYGLICT 480
  481 TIYRLMKFLV SGPKPISGTP RKAFKVLFEI SSTAKVFLIF AIEIFFFPVY CGWLLDFCAA 540
  541 PLFVPQFIQT AENGGKVVTF LVSSYFEMMQ LPYLRVLLYW ASGTLYMLFF ALYIGMVRST 600
  601 ILRPGVLFFI RCPDDPNTRL IHDALVKPLS LQLSRIYLTA KVYSAFIIFG IGGVTWGLRY 660
  661 LVTPKDKDYN VFLPIQTPSY FTYLLLAIIV PTLVDSQATV TKYVRQYWER AFEISSHKLR 720
  721 LSHFIVGKPI SSERGYVIYR NIWLQLFGSN VQPDYTQPVT RKEALAKFKQ DPNAVAFFVP 780
  781 DGNYVRAPAN DTISRKFVKK LFVAVSKDDR LLQEVKETPK RSGYETPTSD EDEDTTTTTT 840
  841 DDAYTIVYRP PNFKLRCFAL ILMLWIFAII IILPVLLFAV VLGRPILRAN SIIIDQLPHI 900
  901 NIDELTNMDW RLTDLASIAI GLAVELQALI YYDKNFAADA PNNAGGNEIQ QADPVRGMLL 960
  961 QGNLLNQAFN RLPAPVLYTL PSSMLWIMWI LTVHKLCVDQ PIRYMTGNLH VEFLLNFKTL1020
 1021 LIHFLVSFWT ILPALVYVTR RIPVEGQTAW QTLKRCGIIP CLLNFSMVHI PAFIVLYSLK1080
 1081 VLDKANISVS FYIWPVLFIC FALVKLITES AKLYTNINNQ VKQEKYVKGR AIENVEDDD