YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3850139
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVVFTFFNL FFLAGTVLLL IFTVLSGSSK HFPLNKFYWL EADTSGIKNA PANRSAWTFW  60
   61 GVCDKADYSN CLLGPAYPIS PEDNFGTTAD IPKDFVDNEN TYYYLSRFAF AFCLIALAFS 120
  121 GLAFIIDILG FCFEIIDKVV IFLITIGLLF LAGFASLQTA VVVLAKNAFK NDGRYAHIGA 180
  181 KSMGIMWAAF ACLLICWLLI FAGTISNSYK KHIARVKAEQ GQYSQPTHGP AGDESSFTRA 240
  241 APPTKDEENT GGIRFFKIKR NQKVSDDESV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.74
Transmembrane Helix	7	29	0.78
Non-Cytoplasmic	30	107	0.92
Transmembrane Helix	108	131	0.91
Cytoplasmic	132	138	0.82
Transmembrane Helix	139	162	0.90
Non-Cytoplasmic	163	183	0.86
Transmembrane Helix	184	205	0.93
Cytoplasmic	206	270	0.93