YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCD4_CANAL
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.90
Transmembrane Helix	7	29	0.82
Non-Cytoplasmic	30	477	0.99
Transmembrane Helix	478	500	0.85
Cytoplasmic	501	510	0.92
Transmembrane Helix	511	531	0.95
Non-Cytoplasmic	532	538	0.77
Transmembrane Helix	539	554	0.83
Cytoplasmic	555	566	0.73
Transmembrane Helix	567	587	0.74
Non-Cytoplasmic	588	593	0.56
Transmembrane Helix	594	614	0.87
Cytoplasmic	615	623	0.67
Transmembrane Helix	624	641	0.91
Non-Cytoplasmic	642	648	0.71
Transmembrane Helix	649	671	0.85
Cytoplasmic	672	682	0.85
Transmembrane Helix	683	705	0.90
Non-Cytoplasmic	706	715	0.71
Transmembrane Helix	716	736	0.93
Cytoplasmic	737	745	0.71
Transmembrane Helix	746	764	0.89
Non-Cytoplasmic	765	765	0.39
Transmembrane Helix	766	786	0.53
Cytoplasmic	787	808	0.49
Transmembrane Helix	809	835	0.77
Non-Cytoplasmic	836	852	0.49
Transmembrane Helix	853	877	0.78
Cytoplasmic	878	885	0.49
Transmembrane Helix	886	907	0.88
Non-Cytoplasmic	908	915	0.47
Transmembrane Helix	916	939	0.79
Cytoplasmic	940	971	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRNRQLLLV IGVLFHFFYL WSIFDIYFVS PLVHGMDHHK STWTPPAKRL FLIVGDGLRA  60
   61 DKTFQKLTHP RTGEEKYLAP YLRSLALNNG TWGISNTRMP TESRPGHVAM IAGFYEDVSA 120
  121 VTKGWKENPV DFDSFFNQSK HTYSFGSPDI LPMFAFGDGV VPGRIDVCMY GHEFEDFTAS 180
  181 SIELDAYVFH HLDELMHNST TNATLNEELR QDGNVFFLHL LGPDTAGHAY RPYSAEYYEN 240
  241 IEYIDRKLEE VIPQINKFFG DDQTAFVFTA DHGMSDFGSH GDGHPDNTRT PLIAWGAGVK 300
  301 KPIHLQDVSN LEEQLLKQSP ENSGFESTYF DTWELDHLVR NDVNQADIAS LMAYLIGANY 360
  361 PANSVGELPL GYIDADPVTK ARALYANSLA IVEQYFVKEQ EVYNHQFKFK PYSPFEEKSI 420
  421 QKYQQEIESL IDQLEKSGSG SKDEIEKKVI AKIEELMKTT LDGLTYLQTY NWLLLRSIVT 480
  481 LGFFGWIVYS FNIFLKLFVL NEDELKIPPE FSVTLVGIFG ALAISINYLL FYQNSPFNYY 540
  541 MYAAFPLYFW YTILNEKKYL ITGIESFLHG ISNTTKFLIV VSFIGMYEGI AYGFFERVMF 600
  601 SIILIIIGLY PLLVHGAHKV SGLMKTIWFI TCLLMCTFTN LDPVKIESLF QINVGTILAL 660
  661 IVSIMGTKQV FKRTQVGPIQ KQLIIAQIAI IPIILFATNI SVLSLQARTG LPLYSQILGW 720
  721 ITFIVSLIVL PILHFLNPSS DYQLRLLIIF LTFVPTFIIL TISFELLFYV GFSLILLQWL 780
  781 SIEELLKFSH KDLVETFEKT GKLPKGYWLQ VIRITIIGFF FLQLAFFGTG NIASISSFSL 840
  841 DSVYRLIPIF DPFSMGALLM IKLIIPYVLL STCLGIMNHQ LEIKKFTIST LIISTSDFLS 900
  901 LNFFFLVRTE GSWLDIGVSI SNYCLAILSS LFMLILELIS SVVLSGVEYN SDGTKLDFEP 960
  961 ISYRVRKRKV T