YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7448
Protein type:	Globular with Signal Peptide
Type Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKKVLLLGS GFVAKPTVDI LSEQPDIEVT VACRTLSKAK ELAGDKAQAI SLDVTDAAQL  60
   61 DEQVAKHDLV ISLIPYTFHV NVVKSAIKNK KNVVTTSYIN PQLKALEKEI EEAGITVMNE 120
  121 IGLDPGIDHL YAVKTIEEVH KAGGKIVSFL SYCGGLPAPE NSDNPLGYKF SWSSRGVLLA 180
  181 LRNQAKYWLD GKVIDISSED LMASAKPYFI YPGYALVCYP NRDSTTYKEL YNIPEAQTVI 240
  241 RGTLRFQGFP EFIKVFVDLG FLKDEPMEIF SKPGPWNKAL AELVGAKSSS EQDIIDKINQ 300
  301 LTKFKSPEDQ ERILAGFRWL GLFSENQITP RGNPLDTLCA TLEELMQYEK GERDLVILQH 360
  361 KFGIEWANGT KETRTSTLVD YGDPNGYSSM AKLVGVPCAV ATKQILSGEL SKKGLLAPMS 420
  421 SDINDSIMKE LKDKYDIYLV EKTI

Type	Start	End	Confidence
Signal Peptide	1	22	0.66
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	444	0.99