YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7447
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	91	0.98
Transmembrane Helix	92	114	0.89
Non-Cytoplasmic	115	127	0.87
Transmembrane Helix	128	149	0.90
Cytoplasmic	150	156	0.86
Transmembrane Helix	157	176	0.94
Non-Cytoplasmic	177	182	0.75
Transmembrane Helix	183	205	0.88
Cytoplasmic	206	214	0.82
Transmembrane Helix	215	235	0.91
Non-Cytoplasmic	236	249	0.82
Transmembrane Helix	250	269	0.96
Cytoplasmic	270	315	0.99
Transmembrane Helix	316	340	0.74
Non-Cytoplasmic	341	362	0.85
Transmembrane Helix	363	381	0.92
Cytoplasmic	382	390	0.67
Transmembrane Helix	391	409	0.95
Non-Cytoplasmic	410	416	0.81
Transmembrane Helix	417	437	0.94
Cytoplasmic	438	449	0.73
Transmembrane Helix	450	466	0.53
Non-Cytoplasmic	467	484	0.50
Transmembrane Helix	485	507	0.90
Cytoplasmic	508	541	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKARADHI SITNSNELNY DDYSNSYKNQ PELDDELFNE KPDLSLSSIS RYFATRLTTL  60
   61 LDLPLYHTHK KWYEVINPIP GLKSMSKSDW NFYCLGFFAW ALDAMDFFCV SVAAPEIANT 120
  121 LNISVTDVTW GVTLVLMLRS VGAVIFGIAS DYFGRKWTYI SIVTLFVVVE VGTGFVQTYQ 180
  181 QFLGVRAIFG ILMGAMYPIA MVTALEGQPI AARSVLSGLF LPGYCFGYIM AMVWYRAFAG 240
  241 TYKEGEGWRS LIWFSGGLSL ILIVWRLFTP ESPDYIKMKI KKEKFNQQQR LKEQEQNGGV 300
  301 AVKEKKFWQK IDKSILVTFK TEWLIFSYLV LLYAGWNFTT HGSQDLYVTM ITKQYHVGLD 360
  361 KKTVIIVVSN IGGIIGGIIM GQASELLGRR LTVVISIVCA GAFLYPSFFN PDRNWPAYIF 420
  421 LNAFVFGSFS VGPAYLLELV NSTHRTLLSG VAYQLGNLVS SASATIEAKI GERFPLKDQP 480
  481 GMFDYGKVMC IFCGAIFAYM IFIIFLGPER FHRDLQIHDT DEIEELQQDS SSNNESVKER 540
  541 V