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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.1944, orf1...
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDLISIATS PTKAFTPAAT PTTIPTTIAT IAASVSAATA TVTTIIKDST DDSTTTASIL  60
   61 SALFNDIILP TIFKRDYSTR DHKANQLGQF TDHQARVQRI VAISSSCGSI AAVLIAMYFL 120
  121 FAIDPKRIVF RHQLIFFLLF FDLLKACILL LYPTRILTHS SAYYNHNFCQ VVGFFTATAI 180
  181 EGADIAIFAF AFHTYLLIFK PSFNTKVKNS NRVEGGLYKF RYYVYSLSFF VPLIVASLAF 240
  241 IHSDGYDSLV CWCYLPMRPV WLRLVLSWVP RYCIVVGIFV IYGLIYIRVI SEFKTLGGVF 300
  301 KNAAGNGGAG NLHLASNSNP TFFSSLKYFF VSMKDQWFPN MSDDTIAPIT SRHSHSHNAS 360
  361 GTIASPHRNV IGEIDNDDGD DDSEELAEAL EDESVDYQDI ELNKQSSRNS YRHHNSDIQQ 420
  421 ANLENFRRRQ RIIQKQMKSI FIYPFAYCLV WLFPFILQAT QFNYEEDHHA VYWLNVLGAL 480
  481 SQPLNGFVDT LVFFYRERPW RNTAMKNFEK ENRQRVDNII VNNLEQRKYS EGAESAQTVA 540
  541 TASKRIAKNS LSASSGLVNI NAYKPWRQFM NKYRFPFYQL PTDKNIAKFQ DRYIRRKLRD 600
  601 SRKLDKLVQE VTRDRQDLTF PTNIAEKYGD GSGNGSGSGS GGHHGGSTIS NTNDSSPMSM 660
  661 GAGINWTEPT NAHDFSNILN TGGNSNVSSW GTKDVPGFKP NFGKFTFGNR SSNLLSRKSS 720
  721 TVIGLHGTGR NVRQPSNDSF NDPVRSLGGR RNSSLVIGNN TTLNKPYEIV SSPTSSTFTP 780
  781 IDRVKSNEDI DELHTVDNDT DKADDNDDGE LDLMEFLKKG PPM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle